Evidence map›Paper›PMID 36826575›Full record

ArticleJournal of cardiovascular development and disease2023

Expression Pattern and Molecular Mechanism of Oxidative Stress-Related Genes in Myocardial Ischemia-Reperfusion Injury.

Jiahe Wu, Jingyi Luo, Huanhuan Cai, Chenze Li, Zhe Lei, Yi Lu, Lihua Ni, Jianlei Cao, Bo Cheng, Xiaorong Hu

Open access · goldAbstract read
In one paragraph

Article in Journal of cardiovascular development and disease, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Jiahe WuDepartment of Cardiology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China.
Jingyi LuoDepartment of Stomatology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China.
Huanhuan CaiDepartment of Cardiology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China.
Chenze LiDepartment of Cardiology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China.
Zhe LeiDepartment of Cardiology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China.
Yi LuDepartment of Cardiology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China.
Lihua NiDepartment of Nephrology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China.
Jianlei CaoDepartment of Cardiology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China.
Bo ChengDepartment of Stomatology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China.ORCID 0000-0003-1916-0410
Xiaorong HuDepartment of Cardiology, Zhongnan Hospital of Wuhan University, Wuhan 430071, China.
Wuhan University · CN

Funding

Zhongnan Hospital of Wuhan University No. PTXM2022002
6 · The paper itself

Abstract

(1) Background: The molecular mechanism of oxidative stress-related genes (OSRGs) in myocardial ischemia-reperfusion injury (MIRI) has not been fully elucidated. (2) Methods: Differential expression analysis, enrichment analysis, and PPI analysis were performed on the MIRI-related datasets GSE160516 and GSE61592 to find key pathways and hub genes. OSRGs were obtained from the Molecular Signatures Database (MSigDB). The expression pattern and time changes of them were studied on the basis of their raw expression data. Corresponding online databases were used to predict miRNAs, transcription factors (TFs), and therapeutic drugs targeting common differentially expressed OSRGs. These identified OSRGs were further verified in the external dataset GSE4105 and H9C2 cell hypoxia-reoxygenation (HR) model. (3) Results: A total of 134 DEGs of MIRI were identified which were enriched in the pathways of "immune response", "inflammatory response", "neutrophil chemotaxis", "phagosome", and "platelet activation". Six hub genes and 12 common differentially expressed OSRGs were identified. A total of 168 miRNAs, 41 TFs, and 21 therapeutic drugs were predicted targeting these OSRGs. Lastly, the expression trends of Aif1, Apoe, Arg1, Col1a1, Gpx7, and Hmox1 were confirmed in the external dataset and HR model. (4) Conclusions: Aif1, Apoe, Arg1, Col1a1, Gpx7, and Hmox1 may be involved in the oxidative stress mechanism of MIRI, and the intervention of these genes may be a potential therapeutic strategy.

Indexed as

bioinformatics analysisenrichment analysismiRNAmyocardial ischemia–reperfusion injuryoxidative stresstherapeutic drugtranscription factors

Identifiers

PMID36826575
PMCPMC9961140
OpenAlexW4320727962

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.