Evidence map›Paper›PMID 36830461›Full record

ArticleAnimals : an open access journal from MDPI2023

Hepatic Transcriptome Analysis Reveals Genes, Polymorphisms, and Molecules Related to Lamb Tenderness.

Kasita Listyarini, Cece Sumantri, Sri Rahayu, Md Aminul Islam, Syeda Hasina Akter, Muhammad Jasim Uddin, Asep Gunawan

Open access · goldAbstract read
In one paragraph

Article in Animals : an open access journal from MDPI, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.3field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Kasita ListyariniGraduate School of Animal Production and Technology, Faculty of Animal Science, IPB University, Bogor 16680, Indonesia.ORCID 0000-0002-5302-7472
Cece SumantriDepartment of Animal Production and Technology, Faculty of Animal Science, IPB University, Bogor 16680, Indonesia.
Sri RahayuDepartment of Animal Production and Technology, Faculty of Animal Science, IPB University, Bogor 16680, Indonesia.
Md Aminul IslamImmunogenomics and Alternative Medicine (IAM) Laboratory, Department of Medicine, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh.ORCID 0000-0003-1979-9652
Syeda Hasina AkterFaculty of Veterinary Science, Bangladesh Agricultural University, Mymensingh 2202, Bangladesh.
Muhammad Jasim UddinSchool of Veterinary Medicine, Murdoch University, Murdoch, WA 6150, Australia.ORCID 0000-0002-6732-5534
Asep GunawanDepartment of Animal Production and Technology, Faculty of Animal Science, IPB University, Bogor 16680, Indonesia.ORCID 0000-0003-0468-2443
IPB University · IDBangladesh Agricultural University · BDMurdoch University · AU

Funding

Ministry of Research, Technology and Higher Education 001/E5/PG.02.00PT/2022
6 · The paper itself

Abstract

Tenderness is a key meat quality trait that determines the public acceptance of lamb consumption, so genetic improvement toward lamb with higher tenderness is pivotal for a sustainable sheep industry. However, unravelling the genomics controlling the tenderness is the first step. Therefore, this study aimed to identify the transcriptome signatures and polymorphisms related to divergent lamb tenderness using RNA deep sequencing. Since the molecules and enzymes that control muscle growth and tenderness are metabolized and synthesized in the liver, hepatic tissues of ten sheep with divergent phenotypes: five high- and five low-lamb tenderness samples were applied for deep sequencing. Sequence analysis identified the number of reads ranged from 21.37 to 25.37 million bases with a mean value of 22.90 million bases. In total, 328 genes are detected as differentially expressed (DEGs) including 110 and 218 genes that were up- and down-regulated, respectively. Pathway analysis showed steroid hormone biosynthesis as the dominant pathway behind the lamb tenderness. Gene expression analysis identified the top high (such as

Indexed as

genetic markermeat qualitynext generation genome sequencingsheepsingle nucleotide polymorphism

Identifiers

PMID36830461
PMCPMC9951696
OpenAlexW4320918347

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.