Evidence map›Paper›PMID 36851531›Full record

ArticleViruses2023

The HIV Restriction Factor Profile in the Brain Is Associated with the Clinical Status and Viral Quantities.

Nazanin Mohammadzadeh, Na Zhang, William G Branton, Ouafa Zghidi-Abouzid, Eric A Cohen, Benjamin B Gelman, Jerome Estaquier, Linglong Kong, Christopher Power

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 8 citations in OpenAlex.

  1. Pooled it
  2. Machine Learning in Nonhuman Primate Models of Infectious Diseases: Current Applications and Future Perspectives.Journal of the American Association for Laboratory Animal Science : JAALAS · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Nazanin MohammadzadehDepartment of Medical Microbiology and Immunology, University of Alberta, Edmonton, AB T6G 2R3, Canada.ORCID 0000-0001-9342-6227
Na ZhangDepartment of Mathematical and Statistical Sciences, University of Alberta, Edmonton, AB T6G 2R3, Canada.ORCID 0000-0001-7850-280X
William G BrantonDepartment of Medicine (Neurology) University of Alberta, 6-11 Heritage Medical Research Centre, Edmonton, AB T6G 2R3, Canada.ORCID 0000-0002-3259-2544
Ouafa Zghidi-AbouzidDepartment of Microbiology and Immunology, CHU de Québec-Université Laval Research Center, Québec, QC G1V 4G2, Canada.
Eric A CohenInstitut de Recherches Cliniques de Montreal and Department of Microbiology, Infectiology and Immunology, Université de Montréal, Montreal, QC J2S 2M2, Canada.ORCID 0000-0003-1269-3791
Benjamin B GelmanDepartment of Pathology, University of Texas Medical Branch, Galveston, TX 77555, USA.
Jerome EstaquierDepartment of Microbiology and Immunology, CHU de Québec-Université Laval Research Center, Québec, QC G1V 4G2, Canada.
Linglong KongDepartment of Mathematical and Statistical Sciences, University of Alberta, Edmonton, AB T6G 2R3, Canada.ORCID 0000-0003-3011-9216
Christopher PowerDepartment of Medical Microbiology and Immunology, University of Alberta, Edmonton, AB T6G 2R3, Canada.
University of Alberta · CAUniversité Laval · CAMontreal Clinical Research Institute · CAThe University of Texas Medical Branch at Galveston · US

Funding

The Manhattan HIV Brain BankU24MH100931 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MORGELLO, SUSAN · 2013 to 2023
$14.0M
California NeuroAIDS Tissue NetworkU24MH100928 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ACHIM, CRISTIAN L, MOORE, DAVID J · 2013 to 2023
$13.9M
NATIONAL NEUROLOGICAL AIDS BANKU24MH100929 · NIMH · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SINGER, ELYSE J · 2013 to 2023
$12.5M
Texas NeuroAIDS Research CenterU24MH100930 · NIMH · UNIVERSITY OF TEXAS MED BR GALVESTON · PI GELMAN, BENJAMIN B. · 2013 to 2023
$12.1M
NNTC Data Coordinating CenterU24MH100925 · NIMH · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI FOX, HOWARD S, SHERMAN, SETH · 2013 to 2022
$9.5M
CIHR HB2-164064NIH HHS U24MH100925NIH HHS U24MH100928NIH HHS U24MH100929NIH HHS U24MH100930NIH HHS U24MH100931NIMH NIH HHS U24 MH100925NIMH NIH HHS U24 MH100928NIMH NIH HHS U24 MH100929NIMH NIH HHS U24 MH100930NIMH NIH HHS U24 MH100931
6 · The paper itself

Abstract

HIV-encoded DNA, RNA and proteins persist in the brain despite effective antiretroviral therapy (ART), with undetectable plasma and cerebrospinal fluid viral RNA levels, often in association with neurocognitive impairments. Although the determinants of HIV persistence have garnered attention, the expression and regulation of antiretroviral host restriction factors (RFs) in the brain for HIV and SIV remain unknown. We investigated the transcriptomic profile of antiretroviral RF genes by RNA-sequencing with confirmation by qRT-PCR in the cerebral cortex of people who are uninfected (HIV[-]), those who are HIV-infected without pre-mortem brain disease (HIV[+]), those who are HIV-infected with neurocognitive disorders (HIV[+]/HAND) and those with neurocognitive disorders with encephalitis (HIV[+]/HIVE). We observed significant increases in RF expression in the brains of HIV[+]/HIVE in association with the brain viral load. Machine learning techniques identified

Indexed as

Brain DiseasesEncephalitisAnimalsAnti-Retroviral AgentsBrainHIV InfectionsMacaca mulattaNeurocognitive DisordersAnti-Retroviral AgentsARTHIV-1host restriction factorsmachine learningMAN1B1RNA-seqSIVtranscriptomics

Identifiers

PMID36851531
PMCPMC9962287
OpenAlexW4317734024

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.