Evidence map›Paper›PMID 36869098›Full record

ArticleNature communications2023

Genetic requirements for repair of lesions caused by single genomic ribonucleotides in S phase.

Natalie Schindler, Matthias Tonn, Vanessa Kellner, Jia Jun Fung, Arianna Lockhart, Olga Vydzhak, Thomas Juretschke, Stefanie Möckel, Petra Beli, Anton Khmelinskii and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. How RNA impacts DNA repair.DNA repair · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Natalie Schindler *Johannes Gutenberg University Mainz, Institute for Developmental Neurology (IDN), Biozentrum 1, Hanns-Dieter-Hüsch-Weg 15, 55128, Mainz, Germany. natalie.schindler@uni-mainz.de.ORCID 0000-0001-7281-4597
Matthias Tonn *Johannes Gutenberg University Mainz, Institute for Developmental Neurology (IDN), Biozentrum 1, Hanns-Dieter-Hüsch-Weg 15, 55128, Mainz, Germany.ORCID 0000-0002-4778-8363
Vanessa KellnerInstitute of Molecular Biology (IMB), Ackermannweg 4, 55128, Mainz, Germany.ORCID 0000-0002-7060-2520
Jia Jun FungInstitute of Molecular Biology (IMB), Ackermannweg 4, 55128, Mainz, Germany.ORCID 0000-0002-9287-4252
Arianna LockhartInstitute of Molecular Biology (IMB), Ackermannweg 4, 55128, Mainz, Germany.
Olga VydzhakJohannes Gutenberg University Mainz, Institute for Developmental Neurology (IDN), Biozentrum 1, Hanns-Dieter-Hüsch-Weg 15, 55128, Mainz, Germany.
Thomas JuretschkeInstitute of Molecular Biology (IMB), Ackermannweg 4, 55128, Mainz, Germany.
Stefanie MöckelInstitute of Molecular Biology (IMB), Ackermannweg 4, 55128, Mainz, Germany.
Petra BeliInstitute of Molecular Biology (IMB), Ackermannweg 4, 55128, Mainz, Germany.ORCID 0000-0001-9507-9820
Anton KhmelinskiiInstitute of Molecular Biology (IMB), Ackermannweg 4, 55128, Mainz, Germany.
Brian LukeJohannes Gutenberg University Mainz, Institute for Developmental Neurology (IDN), Biozentrum 1, Hanns-Dieter-Hüsch-Weg 15, 55128, Mainz, Germany. b.luke@imb-mainz.de.ORCID 0000-0002-1648-5511

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Single ribonucleoside monophosphates (rNMPs) are transiently present in eukaryotic genomes. The RNase H2-dependent ribonucleotide excision repair (RER) pathway ensures error-free rNMP removal. In some pathological conditions, rNMP removal is impaired. If these rNMPs hydrolyze during, or prior to, S phase, toxic single-ended double-strand breaks (seDSBs) can occur upon an encounter with replication forks. How such rNMP-derived seDSB lesions are repaired is unclear. We expressed a cell cycle phase restricted allele of RNase H2 to nick at rNMPs in S phase and study their repair. Although Top1 is dispensable, the RAD52 epistasis group and Rtt101

Indexed as

Gene Regulatory NetworksRibonucleasesS PhaseDNA ReplicationEndoribonucleasesGenomicsSaccharomyces cerevisiaeEndoribonucleasesRibonucleases

Identifiers

PMID36869098
PMCPMC9984532

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.