Evidence map›Paper›PMID 36869161›Full record

ArticleCommunications medicine2023

Plasma metabolites with mechanistic and clinical links to the neurovascular disease cavernous angioma.

Abhinav Srinath, Bingqing Xie, Ying Li, Je Yeong Sone, Sharbel Romanos, Chang Chen, Anukriti Sharma, Sean Polster, Pieter C Dorrestein, Kelly C Weldon and 22 more

Open access · goldAbstract read
In one paragraph

Article in Communications medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 2 pooled it
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 2 syntheses or guidelines pooled it, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

32 authors at 5 institutions in 2 countries.

Abhinav Srinath *Neurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0001-7336-7231
Bingqing Xie *Department of Medicine, University of Chicago, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0001-9246-9321
Ying LiNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-4107-5442
Je Yeong SoneNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-6451-4401
Sharbel RomanosNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-0719-6355
Chang ChenBioinformatics Core, Center for Research Informatics, The University of Chicago, Chicago, IL, 60637, USA.
Anukriti SharmaDepartment of Surgery, The University of Chicago, 5841 S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-5388-3981
Sean PolsterNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-3229-5021
Pieter C DorresteinDepartment of Pediatrics, The University of California San Diego and Scripps Institution of Oceanography, 9500 Gilman Drive, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0002-3003-1030
Kelly C WeldonDepartment of Pediatrics, The University of California San Diego and Scripps Institution of Oceanography, 9500 Gilman Drive, La Jolla, CA, 92093, USA.ORCID http://orcid.org/0000-0003-1064-8153
Dorothy DeBiasseNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.
Thomas MooreNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.
Rhonda LightleNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.
Janne KoskimäkiNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-2311-6327
Dongdong ZhangNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0003-3433-9099
Agnieszka StadnikNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-2038-6487
Kristina PiedadNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-8670-2219
Matthew HaganNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0003-4130-3430
Abdallah ShkoukaniNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-5058-9752
Julián Carrión-PenagosNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.
Dehua BiDepartment of Public Health Sciences, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-7883-5599
Le ShenNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-4367-5476
Robert ShenkarNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0002-1300-6845
Yuan JiDepartment of Public Health Sciences, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0003-4712-5567
Ashley SidebottomHost-Microbe Metabolomics Facility, Duchossois Family Institute, University of Chicago, Chicago, IL, USA.
Eric PamerHost-Microbe Metabolomics Facility, Duchossois Family Institute, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-6755-9904
Jack A GilbertDepartment of Surgery, The University of Chicago, 5841 S. Maryland Avenue, Chicago, IL, 60637, USA.ORCID http://orcid.org/0000-0001-7920-7001
Mark L KahnDepartment of Medicine and Cardiovascular Institute, University of Pennsylvania, 3400 Civic Center Boulevard, Philadelphia, PA, 19104, USA.
Mark D'SouzaHost-Microbe Metabolomics Facility, Duchossois Family Institute, University of Chicago, Chicago, IL, USA.
Dinanath SulakheHost-Microbe Metabolomics Facility, Duchossois Family Institute, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-4680-1212
Issam A AwadNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA. iawad@uchicago.edu.ORCID http://orcid.org/0000-0003-1510-602X
Romuald GirardNeurovascular Surgery Program, Department of Neurological Surgery, The University of Chicago, 5841S. Maryland Avenue, Chicago, IL, 60637, USA.
University of Chicago · USScripps Institution of Oceanography · USChicago Department of Public Health · USHarbin Medical University · CNUniversity of Pennsylvania · US

Funding

Ruth L. Kirschstein National Research Service Award (NRSA) Institutional Research Training Grant (Parent T32)T32HD007009 · NICHD · UNIVERSITY OF CHICAGO · PI NANCY B SCHWARTZ · 1985 to 2026
$13.0M
Somatic mutation(s) and cellular changes in CCM pathogenesisP01NS092521 · NINDS · DUKE UNIVERSITY · PI MARCHUK, DOUGLAS A. · 2015 to 2024
$12.9M
Atorvastatin Treatment of Cavernous Angiomas with Symptomatic Hemorrhage Exploratory Proof of Concept (AT CASH EPOC) TrialR01NS107887 · NINDS · UNIVERSITY OF CHICAGO · PI AWAD, ISSAM A · 2018 to 2022
$3.9M
Trial Readiness in Cavernous Angiomas with Symptomatic HemorrhageU01NS104157 · NINDS · UNIVERSITY OF CHICAGO · PI AWAD, ISSAM A · 2018 to 2022
$3.8M
Biomarkers of Cerebral Cavernous Angioma with Symptomatic Hemorrhage (CASH) - SupplementalR01NS114552 · NINDS · UNIVERSITY OF CHICAGO · PI AWAD, ISSAM A · 2020 to 2024
$3.4M
BIOMARKERS OF BRAIN PERMEABILITY IN HUMAN CEREBRAL CAVERNOUS MALFORMATIONSR21NS087328 · NINDS · UNIVERSITY OF CHICAGO · PI AWAD, ISSAM A · 2014 to 2015
$435k
NICHD NIH HHS T32 HD007009NINDS NIH HHS P01 NS092521NINDS NIH HHS R01 NS107887NINDS NIH HHS R01 NS114552NINDS NIH HHS R21 NS087328NINDS NIH HHS U01 NS104157
6 · The paper itself

Abstract

backgroundCavernous angiomas (CAs) affect 0.5% of the population, predisposing to serious neurologic sequelae from brain bleeding. A leaky gut epithelium associated with a permissive gut microbiome, was identified in patients who develop CAs, favoring lipid polysaccharide producing bacterial species. Micro-ribonucleic acids along with plasma levels of proteins reflecting angiogenesis and inflammation were also previously correlated with CA and CA with symptomatic hemorrhage.

methodsThe plasma metabolome of CA patients and CA patients with symptomatic hemorrhage was assessed using liquid-chromatography mass spectrometry. Differential metabolites were identified using partial least squares-discriminant analysis (p < 0.05, FDR corrected). Interactions between these metabolites and the previously established CA transcriptome, microbiome, and differential proteins were queried for mechanistic relevance. Differential metabolites in CA patients with symptomatic hemorrhage were then validated in an independent, propensity matched cohort. A machine learning-implemented, Bayesian approach was used to integrate proteins, micro-RNAs and metabolites to develop a diagnostic model for CA patients with symptomatic hemorrhage.

resultsHere we identify plasma metabolites, including cholic acid and hypoxanthine distinguishing CA patients, while arachidonic and linoleic acids distinguish those with symptomatic hemorrhage. Plasma metabolites are linked to the permissive microbiome genes, and to previously implicated disease mechanisms. The metabolites distinguishing CA with symptomatic hemorrhage are validated in an independent propensity-matched cohort, and their integration, along with levels of circulating miRNAs, enhance the performance of plasma protein biomarkers (up to 85% sensitivity and 80% specificity).

conclusionsPlasma metabolites reflect CAs and their hemorrhagic activity. A model of their multiomic integration is applicable to other pathologies.

Identifiers

PMID36869161
PMCPMC9984539
OpenAlexW4323041698

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.