Evidence map›Paper›PMID 36882421›Full record

ArticleNature communications2023

SOX11 regulates SWI/SNF complex components as member of the adrenergic neuroblastoma core regulatory circuitry.

Bieke Decaesteker, Amber Louwagie, Siebe Loontiens, Fanny De Vloed, Sarah-Lee Bekaert, Juliette Roels, Suzanne Vanhauwaert, Sara De Brouwer, Ellen Sanders, Alla Berezovskaya and 20 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Article
  3. Epigenetic crosstalk in neuroblastoma development and progression.Frontiers in cell and developmental biology · 2026
    Review
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  5. Article
  6. Article
  7. Article
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  9. Article
  10. Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  11. Review
  12. Article
  13. Lineage-Selective Dependencies in Pediatric Cancers.Cold Spring Harbor perspectives in medicine · 2025
    Review
  14. Review
  15. Review
  16. Cell state plasticity in neuroblastoma.EJC paediatric oncology · 2024
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 9 institutions in 5 countries.

Bieke Decaesteker *Department of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium. Bieke.Decaesteker@ugent.be.ORCID 0000-0003-2264-781X
Amber Louwagie *Department of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.ORCID 0000-0003-1808-6749
Siebe LoontiensDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.ORCID 0000-0002-4602-4580
Fanny De VloedDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.ORCID 0000-0002-1130-7900
Sarah-Lee BekaertDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.ORCID 0000-0002-4769-3460
Juliette RoelsDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.ORCID 0000-0001-7230-3690
Suzanne VanhauwaertDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.ORCID 0000-0002-7768-4549
Sara De BrouwerDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.
Ellen SandersDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.
Alla BerezovskayaDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.
Geertrui DeneckerDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.
Eva D'haeneDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.
Stéphane Van HaverDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.
Wouter Van LoockeDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.
Jo Van DorpeCancer Research Institute Ghent (CRIG), Ghent, 9000, Belgium.ORCID 0000-0001-8175-2930
David CreytensCancer Research Institute Ghent (CRIG), Ghent, 9000, Belgium.
Nadine Van RoyDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.
Tim PietersDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.
Christophe Van NesteDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.ORCID 0000-0002-5958-5731
Matthias FischerDepartment for Experimental Pediatric Oncology, and Center for Molecular Medicine Cologne (CMMC), Medical Faculty, University of Cologne, Cologne, Germany.ORCID 0000-0003-1363-1242
Pieter Van VlierbergheDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.ORCID 0000-0001-9063-7205
Stephen S RobertsDepartment of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.
Johannes SchulteDepartment of Pediatric Oncology and Hematology, Charité-Universitätsmedizin Berlin, Berlin, 13353, Germany.ORCID 0000-0003-0671-1201
Sara EkDepartment of Immunotechnology, Lund University, Lund, Sweden.ORCID 0000-0002-1388-4912
Rogier VersteegDepartment of Oncogenomics, Academic Medical Center, Amsterdam, 1105, AZ, The Netherlands.ORCID 0000-0001-7172-0388
Jan KosterDepartment of Oncogenomics, Academic Medical Center, Amsterdam, 1105, AZ, The Netherlands.ORCID 0000-0002-0890-7585
Johan van NesDepartment of Oncogenomics, Academic Medical Center, Amsterdam, 1105, AZ, The Netherlands.
Mark ZimmermanDepartment of Pediatric Oncology, Dana-Farber Cancer Institute, Boston, MA, 02215, USA.ORCID 0000-0003-2489-3889
Katleen De PreterDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium.ORCID 0000-0002-7726-5096
Frank SpelemanDepartment of Biomolecular medicine, Ghent University, Ghent, 9000, Belgium. Franki.Speleman@ugent.be.ORCID 0000-0002-6628-8559
Ghent University · BEAmsterdam UMC Location University of Amsterdam · NLDana-Farber Cancer Institute · USGhent University Hospital · BEMemorial Sloan Kettering Cancer Center · USUniversity College Ghent · BECharité - Universitätsmedizin Berlin · DELund University · SEUniversity of Cologne · DE

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

The pediatric extra-cranial tumor neuroblastoma displays a low mutational burden while recurrent copy number alterations are present in most high-risk cases. Here, we identify SOX11 as a dependency transcription factor in adrenergic neuroblastoma based on recurrent chromosome 2p focal gains and amplifications, specific expression in the normal sympatho-adrenal lineage and adrenergic neuroblastoma, regulation by multiple adrenergic specific (super-)enhancers and strong dependency on high SOX11 expression in adrenergic neuroblastomas. SOX11 regulated direct targets include genes implicated in epigenetic control, cytoskeleton and neurodevelopment. Most notably, SOX11 controls chromatin regulatory complexes, including 10 SWI/SNF core components among which SMARCC1, SMARCA4/BRG1 and ARID1A. Additionally, the histone deacetylase HDAC2, PRC1 complex component CBX2, chromatin-modifying enzyme KDM1A/LSD1 and pioneer factor c-MYB are regulated by SOX11. Finally, SOX11 is identified as a core transcription factor of the core regulatory circuitry (CRC) in adrenergic high-risk neuroblastoma with a potential role as epigenetic master regulator upstream of the CRC.

Indexed as

NeuroblastomaAdrenergic AgentsCell NucleusChildChromatinChromosome AberrationsDNA HelicasesHistone DemethylasesHumansNuclear ProteinsSOXC Transcription FactorsTranscription FactorsAdrenergic AgentsChromatinDNA HelicasesHistone DemethylasesKDM1A protein, humanNuclear ProteinsSMARCA4 protein, humanSOX11 protein, humanSOXC Transcription FactorsTranscription Factors

Identifiers

PMID36882421
PMCPMC9992472
OpenAlexW4323355631

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.