Evidence map›Paper›PMID 36905119›Full record

ArticleMolecular therapy : the journal of the American Society of Gene Therapy2023

An optimized SpCas9 high-fidelity variant for direct protein delivery.

Eleonora Pedrazzoli, Andrea Bianchi, Alessandro Umbach, Simone Amistadi, Mégane Brusson, Giacomo Frati, Matteo Ciciani, Kalina Aleksandra Badowska, Daniele Arosio, Annarita Miccio and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular therapy : the journal of the American Society of Gene Therapy, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Safety and efficacy studies of CRISPR-Cas9 treatment of sickle cell disease highlights disease-specific responses.Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  6. Development and IND-enabling studies of a novel Cas9 genome-edited autologous CD34Molecular therapy : the journal of the American Society of Gene Therapy · 2024
    Article
  7. Article
  8. Engineering Cas9: next generation of genomic editors.Applied microbiology and biotechnology · 2024
    Review
  9. Review
  10. Review
  11. Enrichment strategies to enhance genome editing.Journal of biomedical science · 2023
    Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 4 countries.

Eleonora PedrazzoliDepartment CIBIO, Laboratory of Molecular Virology, University of Trento, Via Sommarive 9, 38123 Trento, Italy.
Andrea BianchiDepartment CIBIO, Laboratory of Molecular Virology, University of Trento, Via Sommarive 9, 38123 Trento, Italy.
Alessandro UmbachDepartment CIBIO, Laboratory of Molecular Virology, University of Trento, Via Sommarive 9, 38123 Trento, Italy.
Simone AmistadiDepartment CIBIO, Laboratory of Molecular Virology, University of Trento, Via Sommarive 9, 38123 Trento, Italy.
Mégane BrussonImagine Institute, Laboratory of Chromatin and Gene Regulation During Development, Université de Paris, INSERM UMR 1163, Paris, France.
Giacomo FratiImagine Institute, Laboratory of Chromatin and Gene Regulation During Development, Université de Paris, INSERM UMR 1163, Paris, France.
Matteo CicianiDepartment CIBIO, Laboratory of Molecular Virology, University of Trento, Via Sommarive 9, 38123 Trento, Italy.
Kalina Aleksandra BadowskaAlia Therapeutics, 38123 Trento, Italy.
Daniele ArosioBiophysics Institute, National Research Council of Italy, 38123 Trento, Italy.
Annarita MiccioImagine Institute, Laboratory of Chromatin and Gene Regulation During Development, Université de Paris, INSERM UMR 1163, Paris, France.
Anna CeresetoDepartment CIBIO, Laboratory of Molecular Virology, University of Trento, Via Sommarive 9, 38123 Trento, Italy. Electronic address: anna.cereseto@unitn.it.
Antonio CasiniAlia Therapeutics, 38123 Trento, Italy. Electronic address: antonio.casini@aliatx.com.
University of Trento · ITInserm · FRInstituto di Biofisica · ESState Innovation Exchange · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Electroporation of the Cas9 ribonucleoprotein (RNP) complex offers the advantage of preventing off-target cleavages and potential immune responses produced by long-term expression of the nuclease. Nevertheless, the majority of engineered high-fidelity Streptococcus pyogenes Cas9 (SpCas9) variants are less active than the wild-type enzyme and are not compatible with RNP delivery. Building on our previous studies on evoCas9, we developed a high-fidelity SpCas9 variant suitable for RNP delivery. The editing efficacy and precision of the recombinant high-fidelity Cas9 (rCas9HF), characterized by the K526D substitution, was compared with the R691A mutant (HiFi Cas9), which is currently the only available high-fidelity Cas9 that can be used as an RNP. The comparative analysis was extended to gene substitution experiments where the two high fidelities were used in combination with a DNA donor template, generating different ratios of non-homologous end joining (NHEJ) versus homology-directed repair (HDR) for precise editing. The analyses revealed a heterogeneous efficacy and precision indicating different targeting capabilities between the two variants throughout the genome. The development of rCas9HF, characterized by an editing profile diverse from the currently used HiFi Cas9 in RNP electroporation, increases the genome editing solutions for the highest precision and efficient applications.

Indexed as

CRISPR-Cas SystemsStreptococcus pyogenesCRISPR-Associated Protein 9ElectroporationGene EditingCRISPR-Associated Protein 9CRISPR-Casgenome editingHDRhematopoietic stem cellshigh-fidelity Cas9protein deliveryRNPspecificity

Identifiers

PMID36905119
PMCPMC10362380
OpenAlexW4323853783

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.