Evidence map›Paper›PMID 36908815›Full record

ArticlePeerJ2023

RNA-seq reveals Nup62 as a potential regulator for cell division after traumatic brain injury in mice hippocampus.

Jianwei Zhao, Weihua Wang, Ke Yan, Haifeng Zhao, Zhen Zhang, Yu Wang, Wenyu Zhu, Shiwen Chen

Open access · goldFull text read
In one paragraph

Article in PeerJ, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Jianwei ZhaoDepartment of Neurosurgery, Suzhou Science & Technology Town Hospital, Suzhou, Jiangsu Province, China.
Weihua WangDepartment of Neurosurgery, Suzhou Science & Technology Town Hospital, Suzhou, Jiangsu Province, China.
Ke YanDepartment of Neurosurgery, Suzhou Science & Technology Town Hospital, Suzhou, Jiangsu Province, China.
Haifeng ZhaoDepartment of Pathology, Suzhou Science & Technology Town Hospital, Suzhou, Jiangsu Province, China.
Zhen ZhangDepartment of Neurosurgery, Suzhou Science & Technology Town Hospital, Suzhou, Jiangsu Province, China.
Yu WangDepartment of Neurosurgery, Suzhou Science & Technology Town Hospital, Suzhou, Jiangsu Province, China.
Wenyu ZhuDepartment of Neurosurgery, Suzhou Science & Technology Town Hospital, Suzhou, Jiangsu Province, China.
Shiwen ChenDepartment of Neurosurgery, Shanghai Sixth People's Hospital Affiliated to Shanghai Jiao Tong University School of Medicine, Shanghai, Shanghai, China.
Shanghai Jiao Tong University · CNSuzhou University of Science and Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Hippocampus impairment is a common condition encountered in the clinical diagnosis and treatment of traumatic brain injury (TBI). Several studies have investigated this phenomenon. However, its molecular mechanism remains unclear. Methods: In this study, Illumina RNA-seq technology was used to determine the gene expression profile in mice hippocampus after TBI. We then conducted bioinformatics analysis to identify the altered gene expression signatures and mechanisms related to TBI-induced pathology in the hippocampus. Real-time quantitative polymerase chain reaction and western blot were adopted to verify the sequencing results. Results: The controlled cortical impact was adopted as the TBI model. Hippocampal specimens were removed for sequencing. Bioinformatics analysis identified 27 upregulated and 17 downregulated differentially expressed genes (DEGs) in post-TBI mouse models. Potential biological functions of the genes were determined

Indexed as

Brain Injuries, TraumaticGene Expression ProfilingAnimalsCell DivisionHippocampusMembrane GlycoproteinsMiceNuclear Pore Complex ProteinsRNA-SeqMembrane GlycoproteinsNuclear Pore Complex Proteinsnuclear pore protein p62BioinformaticsHippocampusNup62RNA-seqTraumatic brain injury

Identifiers

PMID36908815
PMCPMC10000302
OpenAlexW4323362300

What Socratic holds

Textfull text, public
LicenceCC BY
measurements read32
identifiers read17
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.