Evidence map›Paper›PMID 36909546›Full record

ArticlebioRxiv : the preprint server for biology2023

Mass spectrometric profiling of HLA-B44 peptidomes provides evidence for tapasin-mediated tryptophan editing.

Amanpreet Kaur, Avrokin Surnilla, Anita J Zaitouna, Venkatesha Basrur, Michael B Mumphrey, Irina Grigorova, Marcin Cieslik, Mary Carrington, Alexey I Nesvizhskii, Malini Raghavan

Open access · greenAbstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Amanpreet KaurDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
Avrokin SurnillaDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
Anita J ZaitounaDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
Venkatesha BasrurDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI, USA.
Michael B MumphreyDepartment of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA.
Irina GrigorovaDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
Marcin CieslikDepartment of Computational Medicine and Bioinformatics, University of Michigan Medical School, Ann Arbor, MI, USA.
Mary CarringtonBasic Science Program, Frederick National Laboratory for Cancer Research, National Cancer Institute, Frederick, MD, USA.
Alexey I NesvizhskiiDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI, USA.
Malini RaghavanDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
University of Michigan · USRagon Institute of MGH, MIT and Harvard · US

Funding

Tissue/InformaticsP50CA186786 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Ganesh S Palapattu · 2014 to 2026
$27.6M
RESEARCH TRAINING IN EXPERIMENTAL IMMUNOPATHOLOGYT32AI007413 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Bethany B. Moore · 1993 to 2026
$9.8M
INTERACTIONS &MECHANISMS OF FUNCTION OF THE TAP COMPLEXR01AI044115 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MALINI RAGHAVAN · 1999 to 2026
$9.3M
Molecular genetics and population studies of the KIR and HLA gene complexesZIABC010792 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CARRINGTON, MARY N. · 2009 to 2025
$7.8M
Molecular Mechanisms of Microbial Pathogenesis Training ProgramT32AI007528 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI CARRUTHERS, VERNON BRUCE · 1998 to 2024
$6.8M
COMPUTATIONAL TOOLS FOR MASS SPECTROMETRY-BASED INTERACTOME DATAR01GM094231 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Alexey I Nesvizhskii · 2010 to 2026
$5.4M
Michigan Center for Translational Cancer Proteogenomics-Diversity SupplementU24CA271037 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Saravana Mohan Dhanasekaran, Alexey I Nesvizhskii · 2022 to 2026
$4.4M
HLA class I peptidome diversities and CD8+ T cell responses to COVID-19 vaccinesR21AI164025 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RAGHAVAN, MALINI · 2022 to 2023
$416k
CCR NIH HHS HHSN261200800001CNCI NIH HHS HHSN261200800001ENCI NIH HHS P50 CA186786NCI NIH HHS U24 CA271037NIAID NIH HHS R01 AI044115NIAID NIH HHS R21 AI164025NIAID NIH HHS T32 AI007413NIAID NIH HHS T32 AI007528NIGMS NIH HHS R01 GM094231
6 · The paper itself

Abstract

Activation of CD8

Identifiers

PMID36909546
PMCPMC10002704
OpenAlexW4322419532

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.