Evidence map›Paper›PMID 36911920›Full record

ArticleG3 (Bethesda, Md.)2023

Isolation and molecular identification of nematode surface mutants with resistance to bacterial pathogens.

Delia O'Rourke, Maria J Gravato-Nobre, Dave Stroud, Emily Pritchett, Emily Barker, Rebecca L Price, Sarah A Robinson, Simon Spiro, Patricia Kuwabara, Jonathan Hodgkin

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Mutations ofmicroPublication biology · 2025
    Article
  8. Review
  9. Review
  10. Article
  11. Exploring the mechanisms of host-specificity of a hyperparasitic bacterium (Frontiers in cellular and infection microbiology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Delia O'RourkeDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
Maria J Gravato-NobreDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
Dave StroudDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
Emily PritchettDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
Emily BarkerDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
Rebecca L PriceDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
Sarah A RobinsonDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
Simon SpiroDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
Patricia KuwabaraSchool of Biochemistry, University of Bristol, Bristol BS8 1TD, UK.
Jonathan HodgkinDepartment of Biochemistry, University of Oxford, Oxford OX1 3QU, UK.
University of Oxford · GBUniversity of Bristol · GB

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Medical Research CouncilNIH HHS P40 OD010440
6 · The paper itself

Abstract

Numerous mutants of the nematode Caenorhabditis elegans with surface abnormalities have been isolated by utilizing their resistance to a variety of bacterial pathogens (Microbacterium nematophilum, Yersinia pseudotuberculosis, and 2 Leucobacter strains), all of which are able to cause disease or death when worms are grown on bacterial lawns containing these pathogens. Previous work led to the identification of 9 srf or bus genes; here, we report molecular identification and characterization of a further 10 surface-affecting genes. Three of these were found to encode factors implicated in glycosylation (srf-2, bus-5, and bus-22), like several of those previously reported; srf-2 belongs to the GT92 family of putative galactosyltransferases, and bus-5 is homologous to human dTDP-D-glucose 4,6-dehydratase, which is implicated in Catel-Manzke syndrome. Other genes encoded proteins with sequence similarity to phosphatidylinositol phosphatases (bus-6), Patched-related receptors (ptr-15/bus-13), steroid dehydrogenases (dhs-5/bus-21), or glypiation factors (bus-24). Three genes appeared to be nematode-specific (srf-5, bus-10, and bus-28). Many mutants exhibited cuticle fragility as revealed by bleach and detergent sensitivity; this fragility was correlated with increased drug sensitivity, as well as with abnormal skiddy locomotion. Most of the genes examined were found to be expressed in epidermal seam cells, which appear to be important for synthesizing nematode surface coat. The results reveal the genetic and biochemical complexity of this critical surface layer, and provide new tools for its analysis.

Indexed as

Caenorhabditis elegans ProteinsAnimalsBacteriaCaenorhabditis elegansGlycosylationHumansMutationCaenorhabditis elegans Proteinsbacterial resistanceCatel–Manzke syndromeC. elegansglycosyltransferaseGT92nematode pathogenssurface genetics

Identifiers

PMID36911920
PMCPMC10151413
OpenAlexW4324018353

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.