Evidence map›Paper›PMID 36920337›Full record

ArticleACS synthetic biology2023

A Genetic Engineering Toolbox for the Lignocellulolytic Anaerobic Gut Fungus

Casey A Hooker, Radwa Hanafy, Ethan T Hillman, Javier Muñoz Briones, Kevin V Solomon

Abstract read
In one paragraph

Article in ACS synthetic biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Casey A HookerDepartment of Agricultural and Biological Engineering, Purdue University, West Lafayette, Indiana 47907, United States.
Radwa HanafyDepartment of Chemical and Biomolecular Engineering, University of Delaware, Newark, Delaware 19716, United States.
Ethan T HillmanDepartment of Agricultural and Biological Engineering, Purdue University, West Lafayette, Indiana 47907, United States.
Javier Muñoz BrionesDepartment of Agricultural and Biological Engineering, Purdue University, West Lafayette, Indiana 47907, United States.
Kevin V SolomonDepartment of Agricultural and Biological Engineering, Purdue University, West Lafayette, Indiana 47907, United States.ORCID 0000-0003-2904-9118

Funding

Predictive Modeling & Optimal Control Framework for Model-Based Epidemic Response in DelawareP20GM103446 · NIGMS · UNIVERSITY OF DELAWARE · PI MELINDA K DUNCAN · 2012 to 2026
$67.2M
Understanding synovial macrophage inflamm-aging within osteoarthritisP20GM139760 · NIGMS · UNIVERSITY OF DELAWARE · PI DAWN M ELLIOTT · 2021 to 2026
$19.1M
Acquisition of a Zeiss LSM710 Confocal MicroscopeS10RR027273 · NCRR · UNIVERSITY OF DELAWARE · PI DUNCAN, MELINDA K · 2010 to 2010
$494k
NCRR NIH HHS S10 RR027273NIGMS NIH HHS P20 GM103446NIGMS NIH HHS P20 GM139760
6 · The paper itself

Abstract

Anaerobic fungi are powerful platforms for biotechnology that remain unexploited due to a lack of genetic tools. These gut fungi encode the largest number of lignocellulolytic carbohydrate active enzymes (CAZymes) in the fungal kingdom, making them attractive for applications in renewable energy and sustainability. However, efforts to genetically modify anaerobic fungi have remained limited due to inefficient methods for DNA uptake and a lack of characterized genetic parts. We demonstrate that anaerobic fungi are naturally competent for DNA and leverage this to develop a nascent genetic toolbox informed by recently acquired genomes for transient transformation of anaerobic fungi. We validate multiple selectable markers (HygR and Neo), an anaerobic reporter protein (iRFP702), enolase and TEF1A promoters, TEF1A terminator, and a nuclear localization tag for protein compartmentalization. This work establishes novel methods to reliably transform the anaerobic fungus

Indexed as

NeocallimastixAnaerobiosisGenetic EngineeringPromoter Regions, Geneticanaerobic gut fungianaerobic reportergene expressionpartsprotein localizationtransformation

Identifiers

PMID36920337
PMCPMC11677189

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.