Evidence mapPaperPMID 36920562Full record

ArticleJournal of cancer research and clinical oncology2023

Long non-coding RNA ENST00000503625 is a potential prognostic biomarker and metastasis suppressor gene in prostate cancer.

Yaoming Li, Ziyu Fang, Silun Ge, Jingyi Li, Le Qu, Xiaolei Shi, Wei Zhang, Yinghao Sun, Shancheng Ren, Luofu Wang

Open access · greenAbstract read
In one paragraph

Article in Journal of cancer research and clinical oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 7 institutions in 1 country.

Yaoming Li *Department of Urology, Institute of Surgery Research, Daping Hospital/Army Medical Center, Army Medical University, Chongqing, 400042, China.
Ziyu Fang *Department of Urology, Changhai Hospital, Naval Medical University, Shanghai, 200433, China.
Silun Ge *Department of Urology, Jinling Hospital, Nanjing Medical University, Nanjing, 201101, China.
Jingyi LiDepartment of Urology, Institute of Surgery Research, Daping Hospital/Army Medical Center, Army Medical University, Chongqing, 400042, China.
Le QuDepartment of Urology, Jinling Hospital, Nanjing Medical University, Nanjing, 201101, China.
Xiaolei ShiDepartment of Urology, Changhai Hospital, Naval Medical University, Shanghai, 200433, China.
Wei ZhangDepartment of Urology, Changhai Hospital, Naval Medical University, Shanghai, 200433, China.
Yinghao SunDepartment of Urology, Changhai Hospital, Naval Medical University, Shanghai, 200433, China.
Shancheng Ren *Department of Urology, Changzheng Hospital, Naval Medical University, Shanghai, 200003, China. renshancheng@gmail.com.
Luofu Wang *Department of Urology, Institute of Surgery Research, Daping Hospital/Army Medical Center, Army Medical University, Chongqing, 400042, China. wangluofu@aliyun.com.
Second Military Medical University · CNChanghai Hospital · CNArmy Medical University · CNDaping Hospital · CNNanjing General Hospital of Nanjing Military Command · CNNanjing Medical University · CNShanghai Changzheng Hospital · CN

Funding

National Natural Science Foundation of China 81800624National Natural Science Foundation of China 81902600Natural Science Foundation of Chongqing cstc2018jcyjAX0666
6 · The paper itself

Abstract

backgroundDysregulation of Long Non-coding RNAs (lncRNAs) emerges to be a hallmark of cancers. Metastatic prostate cancer and localized disease that recurs after treatment are clinical challenges, it remains unclear how lncRNA plays a role in those processes.

methodsFrom previous RNA-Seq data on 65 prostate cancer and adjacent normal tissues. We identified a novel lncRNA ENST00000503625 down-regulated in prostate cancer and correlated with tumor progression characteristics. Public datasets were examined for associations between ENST00000503625 expression and clinical parameters and prognoses. Subsequently, we constructed and externally validated a nomogram for predicting biochemical recurrence (BCR). Finally, in vitro experiments were carried out to determine how ENST00000503625 functions biologically in prostate cancer.

resultsLow ENST00000503625 in tumor was associated with poor clinical features and prognoses. TCGA pan-cancer analysis found that ENST00000503625 was deregulated in a variety of tumors and correlated with overall survival, disease-specific survival, and progression-free survival. The nomogram for predicting BCR was constructed using TCGA data, which exhibited excellent accuracy in external validation with Chinese Prostate Cancer Genome and Epigenome Atlas data. Gene Ontology and KEGG pathway analysis found that genes related to ENST00000503625 were enriched in multiple tumor progression related pathways. When ENST00000503625 was knocked down in vitro, the epithelial-mesenchymal transition was induced, by which cancer cells migrated and invaded more readily.

conclusionOur data suggested that ENST00000503625 may serve as a potential prognostic marker or a therapeutic target for prostate cancer metastases.

Indexed as

Prostatic NeoplasmsRNA, Long NoncodingBiomarkersGenes, Tumor SuppressorHumansMalePrognosisBiomarkersRNA, Long NoncodingENST00000503625Long non-coding RNAMetastasisPrognosisProstate cancer

Identifiers

PMID36920562
PMCPMC11798002
OpenAlexW4324306048

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.