Evidence map›Paper›PMID 36929010›Full record

ArticleNucleic acids research2023

Structural basis for the tRNA-dependent activation of the terminal complex of selenocysteine synthesis in humans.

Anupama K Puppala, Jennifer Castillo Suchkou, Rachel L French, Kaitlyn A Kiernan, Miljan Simonović

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Anupama K PuppalaDepartment of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, IL60607, USA.ORCID 0000-0002-9701-7129
Jennifer Castillo SuchkouDepartment of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, IL60607, USA.ORCID 0000-0003-1210-7924
Rachel L FrenchDepartment of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, IL60607, USA.ORCID 0000-0003-0409-4959
Kaitlyn A KiernanDepartment of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, IL60607, USA.ORCID 0000-0001-5725-7833
Miljan SimonovićDepartment of Biochemistry and Molecular Genetics, University of Illinois at Chicago, Chicago, IL60607, USA.ORCID 0000-0002-1576-2222
University of Illinois Chicago · US

Funding

The mechanism of selenium incorporation into selenocysteine in humans.R01GM097042 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI POLIKANOV, YURY · 2012 to 2021
$3.0M
NIGMS NIH HHS R01 GM097042
6 · The paper itself

Abstract

O-Phosphoseryl-tRNASec selenium transferase (SepSecS) catalyzes the terminal step of selenocysteine (Sec) synthesis in archaea and eukaryotes. How the Sec synthetic machinery recognizes and discriminates tRNASec from the tRNA pool is essential to the integrity of the selenoproteome. Previously, we suggested that SepSecS adopts a competent conformation that is pre-ordered for catalysis. Herein, using high-resolution X-ray crystallography, we visualized tRNA-dependent conformational changes in human SepSecS that may be a prerequisite for achieving catalytic competency. We show that tRNASec binding organizes the active sites of the catalytic protomer, while stabilizing the N- and C-termini of the non-catalytic protomer. Binding of large anions to the catalytic groove may further optimize the catalytic site for substrate binding and catalysis. Our biochemical and mutational analyses demonstrate that productive SepSecS•tRNASec complex formation is enthalpically driven and primarily governed by electrostatic interactions between the acceptor-, TΨC-, and variable arms of tRNASec and helices α1 and α14 of SepSecS. The detailed visualization of the tRNA-dependent activation of SepSecS provides a structural basis for a revised model of the terminal reaction of Sec formation in archaea and eukaryotes.

Indexed as

RNA, TransferSelenocysteineCatalytic DomainCrystallography, X-RayHumansProtein SubunitsProtein SubunitsRNA, TransferSelenocysteine

Identifiers

PMID36929010
PMCPMC10164584
OpenAlexW4327683656

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.