Evidence map›Paper›PMID 36950380›Full record

ArticleCell genomics2023

Systematic assessment of prognostic molecular features across cancers.

Balaji Santhanam, Panos Oikonomou, Saeed Tavazoie

Full text read
In one paragraph

Article in Cell genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Balaji SanthanamDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Panos OikonomouDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.
Saeed TavazoieDepartment of Biological Sciences, Columbia University, New York, NY 10027, USA.

Funding

Single-Cell & Computational Biology CoreU54CA261701 · NCI · ROCKEFELLER UNIVERSITY · PI Sohail F. Tavazoie · 2021 to 2026
$9.1M
Mapping the regulatory landscape of RNA binding proteins and their causal roles in tumorigenesis and patient survivalR01CA257153 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Saeed F Tavazoie, Sohail F. Tavazoie · 2021 to 2026
$2.7M
NCI NIH HHS R01 CA257153NCI NIH HHS U54 CA261701
6 · The paper itself

Abstract

Precision oncology promises accurate prediction of disease trajectories by utilizing molecular features of tumors. We present a systematic analysis of the prognostic potential of diverse molecular features across large cancer cohorts. We find that the mRNA expression of biologically coherent sets of genes (modules) is substantially more predictive of patient survival than single-locus genomic and transcriptomic aberrations. Extending our analysis beyond existing curated gene modules, we find a large novel class of highly prognostic DNA/RNA

Indexed as

cancer genomicscancer regulatory networksprecision oncologyprognostic cancer biomarkers

Identifiers

PMID36950380
PMCPMC10025453

What Socratic holds

Textfull text, public
LicenceCC BY
measurements read42
table measurements read7
identifiers read2
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.