Evidence map›Paper›PMID 36950870›Full record

ArticleMedical physics2023

In silico simulation of hepatic arteries: An open-source algorithm for efficient synthetic data generation.

Joseph F Whitehead, Paul F Laeseke, Sarvesh Periyasamy, Michael A Speidel, Martin G Wagner

Abstract read
In one paragraph

Article in Medical physics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Joseph F WhiteheadDepartment of Medical Physics, University of Wisconsin - Madison, Madison, Wisconsin, USA.
Paul F LaesekeDepartment of Medicine, University of Wisconsin - Madison, Madison, Wisconsin, USA.
Sarvesh PeriyasamyDepartment of Radiology, University of Wisconsin - Madison, Madison, Wisconsin, USA.
Michael A SpeidelDepartment of Medical Physics, University of Wisconsin - Madison, Madison, Wisconsin, USA.
Martin G WagnerDepartment of Medical Physics, University of Wisconsin - Madison, Madison, Wisconsin, USA.

Funding

U.W. RADIOLOGICAL SCIENCES TRAINING PROGRAMT32CA009206 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI Bryan Patrick Bednarz · 1985 to 2026
$12.1M
Integrated Training For Physician-ScientistsT32GM140935 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI Anna Huttenlocher, Jeniel E Nett · 2021 to 2026
$6.5M
Motion Compensated 4D Fluoroscopy And Dynamic Roadmaps For Real Time Device Guidance In Minimally Invasive Liver ProceduresR21EB024553 · NIBIB · UNIVERSITY OF WISCONSIN-MADISON · PI WAGNER, MARTIN GERD · 2018 to 2019
$597k
Development of a Quantitative Angiography Technique for Characterizing Hepatic Perfusion Changes in Response to EmbolizationF30CA250408 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI PERIYASAMY, SARVESH · 2020 to 2022
$111k
NCI NIH HHS F30 CA250408NCI NIH HHS F30CA250408NCI NIH HHS T32 CA009206NCI NIH HHS T32CA009206NIBIB NIH HHS R21 EB024553NIGMS NIH HHS T32 GM140935
6 · The paper itself

Abstract

backgroundIn silico testing of novel image reconstruction and quantitative algorithms designed for interventional imaging requires realistic high-resolution modeling of arterial trees with contrast dynamics. Furthermore, data synthesis for training of deep learning algorithms requires that an arterial tree generation algorithm be computationally efficient and sufficiently random. PURPOSE: The purpose of this paper is to provide a method for anatomically and physiologically motivated, computationally efficient, random hepatic arterial tree generation.

methodsThe vessel generation algorithm uses a constrained constructive optimization approach with a volume minimization-based cost function. The optimization is constrained by the Couinaud liver classification system to assure a main feeding artery to each Couinaud segment. An intersection check is included to guarantee non-intersecting vasculature and cubic polynomial fits are used to optimize bifurcation angles and to generate smoothly curved segments. Furthermore, an approach to simulate contrast dynamics and respiratory and cardiac motion is also presented.

resultsThe proposed algorithm can generate a synthetic hepatic arterial tree with 40 000 branches in 11 s. The high-resolution arterial trees have realistic morphological features such as branching angles (MAD with Murray's law

conclusionsThis method facilitates the generation of large datasets of high-resolution, unique hepatic angiograms for the training of deep learning algorithms and initial testing of novel 3D reconstruction and quantitative algorithms designed for interventional imaging.

Indexed as

Hepatic ArteryLiverAlgorithmsAngiographyComputer Simulationdata synthesishepatic arterial treesinterventional imaging simulation

Identifiers

PMID36950870
PMCPMC10517083

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.