Evidence map›Paper›PMID 36952446›Full record

ArticlePloS one2023

Characterization of methylation profiles in spontaneous preterm birth placental villous tissue.

Heather M Brockway, Samantha L Wilson, Suhas G Kallapur, Catalin S Buhimschi, Louis J Muglia, Helen N Jones

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Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Heather M BrockwayDepartment of Physiology and Functional Genomics, College of Medicine at the University of Florida, Gainesville, Florida, United States of America.
Samantha L WilsonPrincess Margaret Cancer Centre, University Health Network, University of Toronto, Toronto, Ontario, Canada.
Suhas G KallapurDivisions of Neonatology and Developmental Biology, David Geffen School of Medicine at the University of California, UCLA Mattel Children's Hospital, Los Angeles, California, United States of America.
Catalin S BuhimschiDepartment of Obstetrics and Gynecology, The University of Illinois College of Medicine, Chicago, Illinois, United States of America.
Louis J MugliaBurroughs Wellcome Fund, Research Triangle Park, North Carolina, United States of America.ORCID 0000-0002-0301-8770
Helen N JonesDepartment of Physiology and Functional Genomics, College of Medicine at the University of Florida, Gainesville, Florida, United States of America.

Funding

Transcriptomics and biomarkers of fetal neuroinflammationR01HD098389 · NICHD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI KALLAPUR, SUHAS · 2019 to 2023
$3.8M
Harnessing "omics": A Systems Biology approach to discovery of biologicalpathways in placental development and parturitionR01HD091527 · NICHD · UNIVERSITY OF FLORIDA · PI BALONI, PRIYANKA, JONES, HELEN N · 2017 to 2021
$2.7M
NICHD NIH HHS R01 HD091527NICHD NIH HHS R01 HD098389
6 · The paper itself

Abstract

Preterm birth is a global public health crisis which results in significant neonatal and maternal mortality. Yet little is known regarding the molecular mechanisms of idiopathic spontaneous preterm birth, and we have few diagnostic markers for adequate assessment of placental development and function. Previous studies of placental pathology and our transcriptomics studies suggest a role for placental maturity in idiopathic spontaneous preterm birth. It is known that placental DNA methylation changes over gestation. We hypothesized that if placental hypermaturity is present in our samples, we would observe a unique idiopathic spontaneous preterm birth DNA methylation profile potentially driving the gene expression differences we previously identified in our placental samples. Our results indicate the idiopathic spontaneous preterm birth DNA methylation pattern mimics the term birth methylation pattern suggesting hypermaturity. Only seven significant differentially methylated regions fitting the idiopathic spontaneous preterm birth specific (relative to the controls) profile were identified, indicating unusually high similarity in DNA methylation between idiopathic spontaneous preterm birth and term birth samples. We identified an additional 1,718 significantly methylated regions in our gestational age matched controls where the idiopathic spontaneous preterm birth DNA methylation pattern mimics the term birth methylation pattern, again indicating a striking level of similarity between the idiopathic spontaneous preterm birth and term birth samples. Pathway analysis of these regions revealed differences in genes within the WNT and Cadherin signaling pathways, both of which are essential in placental development and maturation. Taken together, these data demonstrate that the idiopathic spontaneous preterm birth samples display a hypermature methylation signature than expected given their respective gestational age which likely impacts birth timing.

Indexed as

Premature BirthDNA MethylationFemaleGene Expression ProfilingHumansInfant, NewbornPlacentaPregnancyTerm Birth

Identifiers

PMID36952446
PMCPMC10035933

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.