Evidence map›Paper›PMID 36971680›Full record

ArticleAging2023

Construction and validation of a hypoxia-related risk signature identified EXO1 as a prognostic biomarker based on 12 genes in lung adenocarcinoma.

Qirui Chen, Shuo Chen, Jing Wang, Yan Zhao, Xin Ye, Yili Fu, Yi Liu

Open access · hybridAbstract read
In one paragraph

Article in Aging, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Qirui ChenDepartment of Thoracic Surgery, Beijing Chaoyang Hospital, Beijing 100020, China.
Shuo ChenDepartment of Thoracic Surgery, Beijing Chaoyang Hospital, Beijing 100020, China.
Jing WangDepartment of Thoracic Surgery, Beijing Chaoyang Hospital, Beijing 100020, China.
Yan ZhaoDepartment of Thoracic Surgery, Beijing Chaoyang Hospital, Beijing 100020, China.
Xin YeDepartment of Thoracic Surgery, Beijing Chaoyang Hospital, Beijing 100020, China.
Yili FuDepartment of Thoracic Surgery, Beijing Chaoyang Hospital, Beijing 100020, China.
Yi LiuDepartment of Thoracic Surgery, Beijing Chaoyang Hospital, Beijing 100020, China.
Beijing Chaoyang Emergency Medical Center · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundIncreasing evidence has demonstrated the clinical importance of hypoxia and its related factors in lung adenocarcinoma (LUAD).

methodsRNA-seq datasets from The Cancer Genome Atlas (TCGA) were analyzed using the differentially expressed genes in hypoxia pathway by the Least Absolute Shrinkage and Selection Operator (LASSO) model. Applying gene ontology (GO) and gene set enrichment analysis (GSEA), a risk signature associated with the survival of LUAD patients was constructed between LUAD and normal tissue.

resultsIn total, 166 hypoxia-related genes were identified. Based on the LASSO Cox regression, 12 genes were selected for the development of the risk signature. Then, we designed an OS-associated nomogram that included the risk score and clinical factors. The concordance index of the nomogram was 0.724. ROC curve showed better predictive ability using the nomogram (AUC = 0.811 for 5-year OS). Finally, the expressions of the 12 genes were validated in two external datasets and EXO1 was recognized as a potential biomarker in the progression of LUAD patients.

conclusionsOverall, our data suggested that hypoxia is associated with the prognosis, and EXO1 acted as a promising biomarker in LUAD.

Indexed as

Adenocarcinoma of LungLung NeoplasmsClinical RelevanceDNA Repair EnzymesExodeoxyribonucleasesHumansHypoxiaPrognosisDNA Repair EnzymesEXO1 protein, humanExodeoxyribonucleasesbioinformatics analysishypoxialung adenocarcinomaTCGA

Identifiers

PMID36971680
PMCPMC10085621
OpenAlexW4360938207

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.