Evidence map›Paper›PMID 36973249›Full record

ArticleNature communications2023

Mechanism of antibody-specific deglycosylation and immune evasion by Streptococcal IgG-specific endoglycosidases.

Beatriz Trastoy, Jonathan J Du, Javier O Cifuente, Lorena Rudolph, Mikel García-Alija, Erik H Klontz, Daniel Deredge, Nazneen Sultana, Chau G Huynh, Maria W Flowers and 7 more

Full text read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Beatriz Trastoy *Structural Glycobiology Laboratory, Biocruces Health Research Institute, Barakaldo, Bizkaia, 48903, Spain. beatriz.trastoy@gmail.com.ORCID 0000-0002-2178-732X
Jonathan J Du *Department of Biochemistry, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Javier O Cifuente *Structural Glycobiology Laboratory, Biocruces Health Research Institute, Barakaldo, Bizkaia, 48903, Spain.ORCID 0000-0001-5420-121X
Lorena RudolphUniversity of Lübeck, Center of Structural and Cell Biology in Medicine (CSCM), Institute of Chemistry and Metabolomics, Ratzeburger Allee 160, 23562, Lübeck, Germany.ORCID 0000-0002-0218-2747
Mikel García-AlijaStructural Glycobiology Laboratory, Biocruces Health Research Institute, Barakaldo, Bizkaia, 48903, Spain.
Erik H KlontzDepartment of Microbiology and Immunology, University of Maryland School of Medicine, Baltimore, MD, 21201, USA.
Daniel DeredgeDepartment of Pharmaceutical Sciences, University of Maryland School of Pharmacy, Baltimore, MD, 21201, USA.ORCID 0000-0002-6897-6523
Nazneen SultanaDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, 30322, USA.ORCID 0000-0001-9866-4443
Chau G HuynhDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Maria W FlowersDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Chao LiDepartment of Chemistry and Biochemistry, University of Maryland, College Park, MD, 20742, USA.
Diego E SastreDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, 30322, USA.
Lai-Xi WangDepartment of Chemistry and Biochemistry, University of Maryland, College Park, MD, 20742, USA.ORCID 0000-0003-4293-5819
Francisco CorzanaDepartamento Química and Centro de Investigación en Síntesis Quı́mica, Universidad de La Rioja, 26006, Rioja, Spain.ORCID 0000-0001-5597-8127
Alvaro MallagarayUniversity of Lübeck, Center of Structural and Cell Biology in Medicine (CSCM), Institute of Chemistry and Metabolomics, Ratzeburger Allee 160, 23562, Lübeck, Germany. alvaro.mallagaraydebenito@uni-luebeck.de.ORCID 0000-0001-5825-4407
Eric J SundbergDepartment of Biochemistry, Emory University School of Medicine, Atlanta, GA, 30322, USA. eric.sundberg@emory.edu.ORCID 0000-0003-0478-3033
Marcelo E GuerinStructural Glycobiology Laboratory, Biocruces Health Research Institute, Barakaldo, Bizkaia, 48903, Spain. mrcguerin@gmail.com.ORCID 0000-0001-9524-3184

Funding

Rationalizing glycoengineering strategies for immunotherapeutic antibodiesR01AI149297 · NIAID · EMORY UNIVERSITY · PI JEFFREY Victor RAVETCH, ERIC JOHN SUNDBERG · 2020 to 2026
$3.7M
Synthesis and Function of Antibody Fc Domain GlycoformsR01GM096973 · NIGMS · UNIV OF MARYLAND, COLLEGE PARK · PI WANG, LAI-XI · 2011 to 2020
$2.4M
NIAID NIH HHS R01 AI149297NIGMS NIH HHS R01 GM096973
6 · The paper itself

Abstract

Bacterial pathogens have evolved intricate mechanisms to evade the human immune system, including the production of immunomodulatory enzymes. Streptococcus pyogenes serotypes secrete two multi-modular endo-β-N-acetylglucosaminidases, EndoS and EndoS2, that specifically deglycosylate the conserved N-glycan at Asn297 on IgG Fc, disabling antibody-mediated effector functions. Amongst thousands of known carbohydrate-active enzymes, EndoS and EndoS2 represent just a handful of enzymes that are specific to the protein portion of the glycoprotein substrate, not just the glycan component. Here, we present the cryoEM structure of EndoS in complex with the IgG1 Fc fragment. In combination with small-angle X-ray scattering, alanine scanning mutagenesis, hydrolytic activity measurements, enzyme kinetics, nuclear magnetic resonance and molecular dynamics analyses, we establish the mechanisms of recognition and specific deglycosylation of IgG antibodies by EndoS and EndoS2. Our results provide a rational basis from which to engineer novel enzymes with antibody and glycan selectivity for clinical and biotechnological applications.

Indexed as

Glycoside HydrolasesImmune EvasionHumansImmunoglobulin GPolysaccharidesStreptococcus pyogenesGlycoside HydrolasesImmunoglobulin GPolysaccharides

Identifiers

PMID36973249
PMCPMC10042849

What Socratic holds

Textfull text, public
LicenceCC BY
measurements read83
table measurements read1
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.