Evidence map›Paper›PMID 36974749›Full record

ArticleJournal of the American Heart Association2023

Single Nucleotide Polymorphism rs9277336 Controls the Nuclear Alpha Actinin 4-Human Leukocyte Antigen-DPA1 Axis and Pulmonary Endothelial Pathophenotypes in Pulmonary Arterial Hypertension.

Neha Hafeez, Anna Kirillova, Yunshan Yue, Rashmi J Rao, Neil J Kelly, Wadih El Khoury, Yassmin Al Aaraj, Yi-Yin Tai, Adam Handen, Ying Tang and 12 more

Open access · goldAbstract read
In one paragraph

Article in Journal of the American Heart Association, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 5 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. [Research progress on bioinformatics in pulmonary arterial hypertension].Zhongguo dang dai er ke za zhi = Chinese journal of contemporary pediatrics · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 3 countries.

Neha HafeezCenter for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, and Blood Vascular Medicine Institute, Division of Cardiology, Department of Medicine University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center Pittsburgh PA.ORCID 0000-0002-4820-0795
Anna KirillovaCenter for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, and Blood Vascular Medicine Institute, Division of Cardiology, Department of Medicine University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center Pittsburgh PA.ORCID 0000-0003-2113-5257
Yunshan YueCenter for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, and Blood Vascular Medicine Institute, Division of Cardiology, Department of Medicine University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center Pittsburgh PA.
Rashmi J RaoCenter for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, and Blood Vascular Medicine Institute, Division of Cardiology, Department of Medicine University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center Pittsburgh PA.
Neil J KellyCenter for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, and Blood Vascular Medicine Institute, Division of Cardiology, Department of Medicine University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center Pittsburgh PA.ORCID 0000-0003-0455-5348
Wadih El KhouryCenter for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, and Blood Vascular Medicine Institute, Division of Cardiology, Department of Medicine University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center Pittsburgh PA.ORCID 0000-0001-5635-9643
Yassmin Al AarajCenter for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, and Blood Vascular Medicine Institute, Division of Cardiology, Department of Medicine University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center Pittsburgh PA.
Yi-Yin TaiCenter for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, and Blood Vascular Medicine Institute, Division of Cardiology, Department of Medicine University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center Pittsburgh PA.
Adam HandenCenter for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, and Blood Vascular Medicine Institute, Division of Cardiology, Department of Medicine University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center Pittsburgh PA.
Ying TangCenter for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, and Blood Vascular Medicine Institute, Division of Cardiology, Department of Medicine University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center Pittsburgh PA.
Danli JiangThe Aging Institute University of Pittsburgh School of Medicine Pittsburgh PA.
Ting WuThe Aging Institute University of Pittsburgh School of Medicine Pittsburgh PA.
Yingze ZhangDivision of Pulmonary Allergy and Critical Care Medicine, Department of Medicine University of Pittsburgh Medical Center Pittsburgh PA.ORCID 0000-0001-6947-2901
Dennis McNamaraCenter for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, and Blood Vascular Medicine Institute, Division of Cardiology, Department of Medicine University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center Pittsburgh PA.
Tatiana V KudryashovaDivision of Pulmonary, Critical Care, and Sleep Medicine, Department of Internal Medicine University of California Davis Davis CA.ORCID 0000-0002-2843-5554
Elena A GoncharovaDivision of Pulmonary, Critical Care, and Sleep Medicine, Department of Internal Medicine University of California Davis Davis CA.ORCID 0000-0001-7118-6752
Dmitry GoncharovDivision of Pulmonary, Critical Care, and Sleep Medicine, Department of Internal Medicine University of California Davis Davis CA.
Thomas BerteroUniversité Côte d'Azur, CNRS, UMR7275, IPMC Valbonne France.ORCID 0000-0002-4801-9902
Mehdi NouraieDivision of Pulmonary Allergy and Critical Care Medicine, Department of Medicine University of Pittsburgh Medical Center Pittsburgh PA.ORCID 0000-0001-7465-0581
Gang LiThe Aging Institute University of Pittsburgh School of Medicine Pittsburgh PA.ORCID 0000-0003-1725-6611
Wei SunCenter for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, and Blood Vascular Medicine Institute, Division of Cardiology, Department of Medicine University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center Pittsburgh PA.ORCID 0000-0002-5255-1213
Stephen Y ChanCenter for Pulmonary Vascular Biology and Medicine, Pittsburgh Heart, Lung, and Blood Vascular Medicine Institute, Division of Cardiology, Department of Medicine University of Pittsburgh School of Medicine and University of Pittsburgh Medical Center Pittsburgh PA.ORCID 0000-0002-9520-7527
University of Pittsburgh Medical Center · USUniversity of California, Davis · USUniversity of Pittsburgh · USCentre National de la Recherche Scientifique · FR

Funding

Technology to Empower Changes in Health (TECH) Network Participant Technologies CenterU24OD023176 · OD · SCRIPPS RESEARCH INSTITUTE, THE · PI TOPOL, ERIC JEFFREY · 2016 to 2022
$204.7M
Precision Medicine Initiative Cohort Program BiobankU24OD023121 · OD · MAYO CLINIC ROCHESTER · PI CEKANOVA, MARIA, CICEK, MINE · 2016 to 2024
$185.5M
Enhancing All of Us Data Resources for Nutrition Precision Health: the All of Us Data and Research CenterU2COD023196 · OD · VANDERBILT UNIVERSITY MEDICAL CENTER · PI GLAZER, DAVID, HARRIS, PAUL A. · 2016 to 2022
$143.7M
Adaptive Platform for Personalized EngagementU24OD023163 · OD · VIGNET, INC. · PI JAIN, PRADUMAN · 2017 to 2020
$102.6M
University of Arizona-Banner Health All of Us Research Program OT2OD026549 · OD · UNIVERSITY OF ARIZONA · PI MORENO, FRANCISCO A, REIMAN, ERIC MICHAEL · 2018 to 2023
$78.9M
California Precision Medicine Research Program ConsortiumOT2OD026552 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ANTON-CULVER, HODA A, OHNO-MACHADO, LUCILA · 2018 to 2023
$73.4M
All of Us PennsylvaniaOT2OD026554 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI REIS, STEVEN E, VISWESWARAN, SHYAM · 2018 to 2023
$72.1M
New York City Consortium for Precision MedicineOT2OD026556 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI BIER, LOUISE E, GHARAVI, ALI G · 2018 to 2023
$67.3M
SouthEast Enrollment Center (SEEC) OT2OD026551 · OD · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI CARRASQUILLO, OLVEEN, COLON, VIVIAN · 2018 to 2023
$62.8M
Southern All of Us NetworkOT2OD026548 · OD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI FOUAD, MONA N., KORF, BRUCE R · 2018 to 2023
$60.5M
Illinois Precision Medicine Consortium OT2OD026557 · OD · NORTHWESTERN UNIVERSITY AT CHICAGO · PI AHSAN, HABIBUL, ARGOS, MARIA · 2018 to 2023
$60.5M
The New England Precision Medicine Consortium of the All of Us Research ProgramOT2OD026553 · OD · MASSACHUSETTS GENERAL HOSPITAL · PI CLARK, CHERYL RENEE, KARLSON, ELIZABETH W · 2018 to 2023
$58.8M
NHLBI NIH HHS F30 HL170649NHLBI NIH HHS K08 HL161435NHLBI NIH HHS R01 HL113178NHLBI NIH HHS R01 HL122596NHLBI NIH HHS R01 HL124021NHLBI NIH HHS R01 HL130261NHLBI NIH HHS R01 HL150638NHLBI NIH HHS R01 HL151228NHLBI NIH HHS T32 HL129964NIH HHS OT2 OD023205NIH HHS OT2 OD023206NIH HHS OT2 OD025276NIH HHS OT2 OD025277NIH HHS OT2 OD025315NIH HHS OT2 OD025337NIH HHS OT2 OD026548NIH HHS OT2 OD026549NIH HHS OT2 OD026550NIH HHS OT2 OD026551NIH HHS OT2 OD026552NIH HHS OT2 OD026553NIH HHS OT2 OD026554NIH HHS OT2 OD026555NIH HHS OT2 OD026556NIH HHS OT2 OD026557NIH HHS U24 OD023121NIH HHS U24 OD023163NIH HHS U24 OD023176NIH HHS U2C OD023196
6 · The paper itself

Abstract

Background Pulmonary arterial hypertension (PAH) is a complex, fatal disease where disease severity has been associated with the single nucleotide polymorphism (SNP) rs2856830, located near the human leukocyte antigen DPA1 (HLA-DPA1) gene. We aimed to define the genetic architecture of functional variants associated with PAH disease severity by identifying allele-specific binding transcription factors and downstream targets that control endothelial pathophenotypes and PAH. Methods and Results Electrophoretic mobility shift assays of oligonucleotides containing SNP rs2856830 and 8 SNPs in linkage disequilibrium revealed functional SNPs via allele-imbalanced binding to human pulmonary arterial endothelial cell nuclear proteins. DNA pulldown proteomics identified SNP-binding proteins. SNP genotyping and clinical correlation analysis were performed in 84 patients with PAH at University of Pittsburgh Medical Center and in 679 patients with PAH in the

Indexed as

ActininHLA-DP beta-ChainsPulmonary Arterial HypertensionEndotheliumGenetic Predisposition to DiseaseHLA-DP alpha-ChainsHumansPolymorphism, Single NucleotideActininACTN4 protein, humanHLA-DPA1 antigenHLA-DP alpha-ChainsHLA-DP beta-Chainsendothelial dysfunctiongenome‐wide association studylinkage disequilibriumpulmonary arterial hypertensionsingle nucleotide polymorphism

Identifiers

PMID36974749
PMCPMC10122886
OpenAlexW4361190237

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.