Evidence map›Paper›PMID 36980900›Full record

ArticleGenes2023

Zeb2 DNA-Binding Sites in Neuroprogenitor Cells Reveal Autoregulation and Affirm Neurodevelopmental Defects, Including in Mowat-Wilson Syndrome.

Judith C Birkhoff, Anne L Korporaal, Rutger W W Brouwer, Karol Nowosad, Claudia Milazzo, Lidia Mouratidou, Mirjam C G N van den Hout, Wilfred F J van IJcken, Danny Huylebroeck, Andrea Conidi

Open access · goldFull text read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Identification of the DNA methylation signature of Mowat-Wilson syndrome.European journal of human genetics : EJHG · 2024
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 3 countries.

Judith C BirkhoffDepartment of Cell Biology, Erasmus University Medical Center, 3015 Rotterdam, The Netherlands.ORCID 0000-0002-1133-7915
Anne L KorporaalDepartment of Cell Biology, Erasmus University Medical Center, 3015 Rotterdam, The Netherlands.
Rutger W W BrouwerCenter for Biomics-Genomics, Erasmus University Medical Center, 3015 Rotterdam, The Netherlands.ORCID 0000-0001-7524-6230
Karol NowosadDepartment of Cell Biology, Erasmus University Medical Center, 3015 Rotterdam, The Netherlands.ORCID 0000-0002-6000-9387
Claudia MilazzoDepartment of Cell Biology, Erasmus University Medical Center, 3015 Rotterdam, The Netherlands.
Lidia MouratidouDepartment of Cell Biology, Erasmus University Medical Center, 3015 Rotterdam, The Netherlands.
Mirjam C G N van den HoutCenter for Biomics-Genomics, Erasmus University Medical Center, 3015 Rotterdam, The Netherlands.ORCID 0000-0003-2412-7631
Wilfred F J van IJckenDepartment of Cell Biology, Erasmus University Medical Center, 3015 Rotterdam, The Netherlands.ORCID 0000-0002-0421-8301
Danny HuylebroeckDepartment of Cell Biology, Erasmus University Medical Center, 3015 Rotterdam, The Netherlands.ORCID 0000-0003-4862-1079
Andrea ConidiDepartment of Cell Biology, Erasmus University Medical Center, 3015 Rotterdam, The Netherlands.
Erasmus MC · NLMedical University of Lublin · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Functional perturbation and action mechanism studies have shown that the transcription factor Zeb2 controls cell fate decisions, differentiation, and/or maturation in multiple cell lineages in embryos and after birth. In cultured embryonic stem cells (ESCs), Zeb2's mRNA/protein upregulation is necessary for the exit from primed pluripotency and for entering general and neural differentiation. We edited mouse ESCs to produce Flag-V5 epitope-tagged Zeb2 protein from one endogenous allele. Using chromatin immunoprecipitation coupled with sequencing (ChIP-seq), we mapped 2432 DNA-binding sites for this tagged Zeb2 in ESC-derived neuroprogenitor cells (NPCs). A new, major binding site maps promoter-proximal to

Indexed as

NeuronsZinc Finger E-box Binding Homeobox 2AnimalsBinding SitesDNAFaciesHirschsprung DiseaseHomozygoteIntellectual DisabilityMiceMicrocephalyMouse Embryonic Stem CellsSequence DeletionDNAZEB2 protein, mouseZinc Finger E-box Binding Homeobox 2chromatin immunoprecipitation sequencingembryonic stem cellsMowat-Wilson syndromeneural differentiationneurodevelopmental disordersyndromestarget genestranscription factortranscriptomicsZeb2

Identifiers

PMID36980900
PMCPMC10048071
OpenAlexW4323046421

What Socratic holds

Textfull text, public
LicenceCC BY
measurements read76
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.