Evidence map›Paper›PMID 36980979›Full record

ArticleGenes2023

A Biallelic Truncating Variant in the TPR Domain of GEMIN5 Associated with Intellectual Disability and Cerebral Atrophy.

Nazia Ibrahim, Shagufta Naz, Francesca Mattioli, Nicolas Guex, Saima Sharif, Afia Iqbal, Muhammad Ansar, Alexandre Reymond

Open access · goldFull text read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Mutations of GEMIN5 are associated with coenzyme QEuropean journal of human genetics : EJHG · 2024
    Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Nazia IbrahimDepartment of Zoology, Lahore College for Women University, Lahore 54000, Pakistan.ORCID 0009-0006-5706-2044
Shagufta NazDepartment of Zoology, Lahore College for Women University, Lahore 54000, Pakistan.ORCID 0000-0001-9699-5193
Francesca MattioliCenter for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland.ORCID 0000-0002-1595-4320
Nicolas GuexBioinformatics Competence Center, University of Lausanne, 1015 Lausanne, Switzerland.ORCID 0000-0001-6023-0519
Saima SharifDepartment of Zoology, Lahore College for Women University, Lahore 54000, Pakistan.ORCID 0000-0003-3169-2380
Afia IqbalDepartment of Zoology, Lahore College for Women University, Lahore 54000, Pakistan.
Muhammad AnsarDepartment of Ophthalmology, University of Lausanne, Jules-Gonin Eye Hospital, Fondation Aisle des Aveugles, 1004 Lausanne, Switzerland.
Alexandre ReymondCenter for Integrative Genomics, University of Lausanne, 1015 Lausanne, Switzerland.
Lahore College for Women University · PKUniversity of Lausanne · CHDow University of Health Sciences · PK

Funding

Swiss National Science Foundation 31003A_182632
6 · The paper itself

Abstract

GEMIN5 is a multifunctional RNA-binding protein required for the assembly of survival motor neurons. Several bi-allelic truncating and missense variants in this gene are reported to cause a neurodevelopmental disorder characterized by cerebellar atrophy, intellectual disability (ID), and motor dysfunction. Whole exome sequencing of a Pakistani consanguineous family with three brothers affected by ID, cerebral atrophy, mobility, and speech impairment revealed a novel homozygous 3bp-deletion NM_015465.5:c.3162_3164del that leads to the loss of NM_015465.5 (NP_056280.2):p. (Asp1054_Ala1055delinsGlu) amino acid in one of the α-helixes of the tetratricopeptide repeats of GEMIN5. In silico 3D representations of the GEMIN5 dimerization domain show that this variant likely affects the orientation of the downstream sidechains out of the helix axis, which would affect the packing with neighboring helices. The phenotype of all affected siblings overlaps well with previously reported patients, suggesting that NM_015465.5: c.3162_3164del (NP_056280.2):p. (Asp1054_Ala1055delinsGlu) is a novel

Indexed as

Intellectual DisabilityNeurodevelopmental DisordersAtrophyHumansMalePedigreeSMN Complex ProteinsTetratricopeptide RepeatGEMIN5 protein, humanSMN Complex Proteinsaspartic acid deletionautosomal recessivecerebral atrophyconsanguinityintellectual disabilityneurodevelopmental disorderTPR domain

Identifiers

PMID36980979
PMCPMC10048441
OpenAlexW4324149085

What Socratic holds

Textfull text, public
LicenceCC BY
measurements read32
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.