Evidence map›Paper›PMID 36993334›Full record

ArticlebioRxiv : the preprint server for biology2023

Rabies virus-based barcoded neuroanatomy resolved by single-cell RNA and

Aixin Zhang, Lei Jin, Shenqin Yao, Makoto Matsuyama, Cindy van Velthoven, Heather Sullivan, Na Sun, Manolis Kellis, Bosiljka Tasic, Ian R Wickersham and 1 more

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Aixin ZhangAllen Institute for Brain Science, Seattle, WA.ORCID 0000-0002-6904-4285
Lei JinMcGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA.
Shenqin YaoAllen Institute for Brain Science, Seattle, WA.ORCID 0000-0003-2992-4752
Makoto MatsuyamaMcGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA.
Cindy van VelthovenAllen Institute for Brain Science, Seattle, WA.ORCID 0000-0001-5120-4546
Heather SullivanMcGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA.
Na SunDepartment of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA.
Manolis KellisDepartment of Electrical Engineering and Computer Science, Massachusetts Institute of Technology, Cambridge, MA.ORCID 0000-0001-7113-9630
Bosiljka TasicAllen Institute for Brain Science, Seattle, WA.ORCID 0000-0002-6861-4506
Ian R WickershamMcGovern Institute for Brain Research, Massachusetts Institute of Technology, Cambridge, MA.ORCID 0000-0003-0389-5324
Xiaoyin ChenAllen Institute for Brain Science, Seattle, WA.ORCID 0000-0002-2807-6125
Allen Institute for Brain Science · USMcGovern Institute for Brain Research · USBroad Institute · US

Funding

Highly multiplexed circuit mapping using barcoded rabies viruses and in situ sequencing.RF1MH132596 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WICKERSHAM, IAN R, YAO, SHENQIN · 2023 to 2023
$2.8M
Re-engineering Rabies VirusRF1MH120017 · NIMH · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WICKERSHAM, IAN R · 2019 to 2019
$2.6M
Unraveling the developmental logic of cortical long-range projections using in situ sequencing-based neuroanatomyDP2MH132940 · NIMH · ALLEN INSTITUTE · PI CHEN, XIAOYIN · 2022 to 2025
$2.6M
NIMH NIH HHS DP2 MH132940NIMH NIH HHS RF1 MH120017NIMH NIH HHS RF1 MH132596
6 · The paper itself

Abstract

Mapping the connectivity of diverse neuronal types provides the foundation for understanding the structure and function of neural circuits. High-throughput and low-cost neuroanatomical techniques based on RNA barcode sequencing have the potential to map circuits at cellular resolution and a brain-wide scale, but existing Sindbis virus-based techniques can only map long-range projections using anterograde tracing approaches. Rabies virus can complement anterograde tracing approaches by enabling either retrograde labeling of projection neurons or monosynaptic tracing of direct inputs to genetically targeted postsynaptic neurons. However, barcoded rabies virus has so far been only used to map non-neuronal cellular interactions

Identifiers

PMID36993334
PMCPMC10055146
OpenAlexW4327862324

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.