Evidence map›Paper›PMID 36998688›Full record

ArticleFrontiers in plant science2023

Identification of long noncoding RNAs involved in plumule-vernalization of Chinese cabbage.

Yun Dai, Guoliang Li, Xinyu Gao, Shaoxing Wang, Ze Li, Chao Song, Shifan Zhang, Fei Li, Zhiyuan Fang, Rifei Sun and 2 more

Open access · goldFull text read
In one paragraph

Article in Frontiers in plant science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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  3. Identification of the MADS-Box Gene Family and the Key Role ofInternational journal of molecular sciences · 2025
    Article
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  6. Exploring the Regulatory Dynamics ofInternational journal of molecular sciences · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 1 institution in 1 country.

Yun DaiInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
Guoliang LiInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
Xinyu GaoInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
Shaoxing WangInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
Ze LiInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
Chao SongInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
Shifan ZhangInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
Fei LiInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
Zhiyuan FangInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
Rifei SunInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
Hui ZhangInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
Shujiang ZhangInstitute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, China.
Institute of Vegetables and Flowers · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vernalization is a phenomenon in which plants must undergo a period of continuous low temperatures to change from the vegetative growth stage to the reproductive growth stage. Chinese cabbage is a heading vegetable, and flowering time is an essential developmental trait. Premature vernalization leads to premature bolting, which causes a loss of product value and yield. While research into vernalization has provided a wealth of information, a complete understanding of the molecular mechanism for controlling vernalization requirements has not yet been elucidated. In this study, using high-throughput RNA sequencing, we analyzed the plumule-vernalization response of mRNA and long noncoding RNA in the bolting-resistant Chinese cabbage double haploid (DH) line 'Ju Hongxin' (JHX). A total of 3382 lncRNAs were identified, of which 1553 differentially expressed (DE) lncRNAs were characterized as plumule-vernalization responses. The ceRNA network revealed that 280 ceRNA pairs participated in the plumule-vernalization reaction of Chinese cabbage. Through identifying DE lncRNAs in Chinese cabbage and analyzing anti-, cis-, and trans-functional analysis, some candidate lncRNAs related to vernalization promoting flowering of Chinese cabbage and their regulated mRNA genes were found. Moreover, the expression of several critical lncRNAs and their targets was verified using qRT-PCR. Furthermore, we identified the candidate plumule-vernalization-related long noncoding RNAs that regulate

Indexed as

ceRNAsFLCslncRNAsmRNAsplumule-vernalizationshoot apical meristem

Identifiers

PMID36998688
PMCPMC10043383
OpenAlexW4324144979

What Socratic holds

Textfull text, public
LicenceCC BY
measurements read50
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.