Evidence map›Paper›PMID 37015919›Full record

ArticleNature communications2023

An epigenetic switch controls an alternative NR2F2 isoform that unleashes a metastatic program in melanoma.

Veronica Davalos, Claudia D Lovell, Richard Von Itter, Igor Dolgalev, Praveen Agrawal, Gillian Baptiste, David J Kahler, Elena Sokolova, Sebastian Moran, Laia Piqué and 11 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
4.0field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 22 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 7 institutions in 3 countries.

Veronica Davalos *Department of Pathology, New York University Grossman School of Medicine, New York, NY, 10016, USA. vdavalos@carrerasresearch.org.ORCID 0000-0003-4077-5137
Claudia D Lovell *Department of Pathology, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Richard Von Itter *Department of Pathology, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Igor DolgalevApplied Bioinformatics Laboratories, New York University Grossman School of Medicine, New York, NY, 10016, USA.ORCID 0000-0003-4451-126X
Praveen AgrawalDepartment of Pathology, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Gillian BaptisteDepartment of Pathology, New York University Grossman School of Medicine, New York, NY, 10016, USA.
David J KahlerHigh Throughput Biology Core, New York University Grossman School of Medicine, New York, NY, 10016, USA.ORCID 0000-0002-7144-2215
Elena SokolovaDepartment of Pathology, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Sebastian MoranJosep Carreras Leukaemia Research Institute (IJC), Badalona, Barcelona, Catalonia, Spain.
Laia PiquéJosep Carreras Leukaemia Research Institute (IJC), Badalona, Barcelona, Catalonia, Spain.
Eleazar Vega-Saenz de MieraInterdisciplinary Melanoma Cooperative Group, Perlmutter Cancer Center, New York University School of Medicine, New York, NY, 10016, USA.
Barbara Fontanals-CireraDepartment of Pathology, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Alcida KarzDepartment of Pathology, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Aristotelis TsirigosDepartment of Pathology, New York University Grossman School of Medicine, New York, NY, 10016, USA.ORCID 0000-0002-7512-8477
Chi YunHigh Throughput Biology Core, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Farbod DarvishianDepartment of Pathology, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Heather C EtcheversAix-Marseille University, MMG, Inserm, U1251, Marseille, France.ORCID 0000-0003-0201-3799
Iman OsmanInterdisciplinary Melanoma Cooperative Group, Perlmutter Cancer Center, New York University School of Medicine, New York, NY, 10016, USA.
Manel EstellerJosep Carreras Leukaemia Research Institute (IJC), Badalona, Barcelona, Catalonia, Spain.ORCID 0000-0003-4490-6093
Markus SchoberInterdisciplinary Melanoma Cooperative Group, Perlmutter Cancer Center, New York University School of Medicine, New York, NY, 10016, USA. Markus.Schober@nyulangone.org.ORCID 0000-0002-9122-2121
Eva HernandoDepartment of Pathology, New York University Grossman School of Medicine, New York, NY, 10016, USA. Eva.Hernando-Monge@nyulangone.org.ORCID 0000-0003-1023-0312
Eastern Cooperative Oncology Group · USHigh Throughput Biology (United States) · USJosep Carreras Leukaemia Research Institute · ESNew York University · USAlbert Einstein College of Medicine · USInserm · FRInstitució Catalana de Recerca i Estudis Avançats · ES

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ANIRBAN MAITRA · 1985 to 2026
$83.1M
Project 4P50CA225450 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI KIRCHHOFF, TOMAS · 2019 to 2025
$12.5M
Project 3: The Evolving Role of Regional Lymph Nodes in Melanoma ProgressionU54CA263001 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Eva Hernando · 2022 to 2026
$11.6M
Sex Differences in Methylome Alterations and Mutational Burden in Early Stage MelanomaP01CA206980 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI BERWICK, MARIANNE, THOMAS, NANCY E. · 2017 to 2022
$10.1M
Research Training for Physician-Scientists in Gastrointestinal OncologyT32CA193111 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BAR-SAGI, DAFNA, WOLFGANG, CHRISTOPHER L. · 2015 to 2024
$2.7M
Defining epigenetic regulators of tumor heterogeneity and metastasis in melanomaR01CA274100 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Eva Hernando, Markus Schober · 2022 to 2026
$2.5M
Post-translational control of cancer cell stress response and metastasisR01CA202027 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI AIFANTIS, IANNIS, HERNANDO, EVA · 2016 to 2020
$2.3M
Sandy Recovery Ventana Medical Systems Discovery XTS10OD018338 · OD · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI CHIRIBOGA, LUIS A · 2014 to 2014
$123k
NCI NIH HHS P01 CA206980NCI NIH HHS P30 CA016087NCI NIH HHS P50 CA225450NCI NIH HHS R01 CA202027NCI NIH HHS R01 CA274100NCI NIH HHS T32 CA193111NCI NIH HHS U54 CA263001NIH HHS S10 OD018338
6 · The paper itself

Abstract

Metastatic melanoma develops once transformed melanocytic cells begin to de-differentiate into migratory and invasive melanoma cells with neural crest cell (NCC)-like and epithelial-to-mesenchymal transition (EMT)-like features. However, it is still unclear how transformed melanocytes assume a metastatic melanoma cell state. Here, we define DNA methylation changes that accompany metastatic progression in melanoma patients and discover Nuclear Receptor Subfamily 2 Group F, Member 2 - isoform 2 (NR2F2-Iso2) as an epigenetically regulated metastasis driver. NR2F2-Iso2 is transcribed from an alternative transcriptional start site (TSS) and it is truncated at the N-terminal end which encodes the NR2F2 DNA-binding domain. We find that NR2F2-Iso2 expression is turned off by DNA methylation when NCCs differentiate into melanocytes. Conversely, this process is reversed during metastatic melanoma progression, when NR2F2-Iso2 becomes increasingly hypomethylated and re-expressed. Our functional and molecular studies suggest that NR2F2-Iso2 drives metastatic melanoma progression by modulating the activity of full-length NR2F2 (Isoform 1) over EMT- and NCC-associated target genes. Our findings indicate that DNA methylation changes play a crucial role during metastatic melanoma progression, and their control of NR2F2 activity allows transformed melanocytes to acquire NCC-like and EMT-like features. This epigenetically regulated transcriptional plasticity facilitates cell state transitions and metastatic spread.

Indexed as

MelanomaSkin NeoplasmsCell Line, TumorCOUP Transcription Factor IIEpigenesis, GeneticEpithelial-Mesenchymal TransitionGene Expression Regulation, NeoplasticHumansProtein IsoformsCOUP Transcription Factor IINR2F2 protein, humanProtein Isoforms

Identifiers

PMID37015919
PMCPMC10073109
OpenAlexW4322616233

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.