Evidence map›Paper›PMID 37022297›Full record

ArticleThe Biochemical journal2023

Divergent contribution of the MVA and MEP pathways to the formation of polyprenols and dolichols in Arabidopsis.

Agata Lipko, Cezary Pączkowski, Laura Perez-Fons, Paul D Fraser, Magdalena Kania, Marta Hoffman-Sommer, Witold Danikiewicz, Michel Rohmer, Jaroslaw Poznanski, Ewa Swiezewska

Open access · hybridAbstract read
In one paragraph

Article in The Biochemical journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Agata LipkoInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.ORCID 0000-0002-4054-610X
Cezary PączkowskiDepartment of Plant Biochemistry, Faculty of Biology, University of Warsaw, Warsaw, Poland.
Laura Perez-FonsSchool of Biological Sciences, Royal Holloway, University of London, Egham Hill, U.K.
Paul D FraserSchool of Biological Sciences, Royal Holloway, University of London, Egham Hill, U.K.
Magdalena KaniaInstitute of Organic Chemistry, Polish Academy of Sciences, Warsaw, Poland.
Marta Hoffman-SommerInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.
Witold DanikiewiczInstitute of Organic Chemistry, Polish Academy of Sciences, Warsaw, Poland.
Michel RohmerUniversité de Strasbourg/CNRS, Institut Le Bel, Strasbourg, France.
Jaroslaw PoznanskiInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.
Ewa SwiezewskaInstitute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland.ORCID 0000-0002-3439-8948
Institute of Biochemistry and Biophysics, Polish Academy of Sciences · PLInstitute of Organic Chemistry · PLRoyal Holloway University of London · GBCentre National de la Recherche Scientifique · FRUniversity of Warsaw · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Isoprenoids, including dolichols (Dols) and polyprenols (Prens), are ubiquitous components of eukaryotic cells. In plant cells, there are two pathways that produce precursors utilized for isoprenoid biosynthesis: the mevalonate (MVA) pathway and the methylerythritol phosphate (MEP) pathway. In this work, the contribution of these two pathways to the biosynthesis of Prens and Dols was addressed using an in planta experimental model. Treatment of plants with pathway-specific inhibitors and analysis of the effects of various light conditions indicated distinct biosynthetic origin of Prens and Dols. Feeding with deuteriated, pathway-specific precursors revealed that Dols, present in leaves and roots, were derived from both MEP and MVA pathways and their relative contributions were modulated in response to precursor availability. In contrast, Prens, present in leaves, were almost exclusively synthesized via the MEP pathway. Furthermore, results obtained using a newly introduced here 'competitive' labeling method, designed so as to neutralize the imbalance of metabolic flow resulting from feeding with a single pathway-specific precursor, suggest that under these experimental conditions one fraction of Prens and Dols is synthesized solely from endogenous precursors (deoxyxylulose or mevalonate), while the other fraction is synthesized concomitantly from endogenous and exogenous precursors. Additionally, this report describes a novel methodology for quantitative separation of 2H and 13C distributions observed for isotopologues of metabolically labeled isoprenoids. Collectively, these in planta results show that Dol biosynthesis, which uses both pathways, is significantly modulated depending on pathway productivity, while Prens are consistently derived from the MEP pathway.

Indexed as

ArabidopsisDolicholsMevalonic AcidPhosphatesPolyprenolsTerpenesDolicholsMevalonic AcidPhosphatesPolyprenolsTerpenesArabidopsis thalianacross-talkdolicholMEP pathwayMVA pathwaypolyprenol

Identifiers

PMID37022297
PMCPMC10212524
OpenAlexW4362657446

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.