Evidence map›Paper›PMID 37024778›Full record

ArticleClinical proteomics2023

Label-free quantitative proteomics reveals aberrant expression levels of LRG, C9, FN, A1AT and AGP1 in the plasma of patients with colorectal cancer.

Chris Verathamjamras, Juthamard Chantaraamporn, Thiwaree Sornprachum, Photsathorn Mutapat, Daranee Chokchaichamnankit, Kanokwan Mingkwan, Virat Luevisadpibul, Chantragan Srisomsap, Somchai Chutipongtanate, Jisnuson Svasti and 1 more

Abstract read
In one paragraph

Article in Clinical proteomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Chris Verathamjamras *Laboratory of Biochemistry, Chulabhorn Research Institute, Bangkok, Thailand.
Juthamard Chantaraamporn *Laboratory of Biochemistry, Chulabhorn Research Institute, Bangkok, Thailand.
Thiwaree SornprachumLaboratory of Biochemistry, Chulabhorn Research Institute, Bangkok, Thailand.
Photsathorn MutapatLaboratory of Biochemistry, Chulabhorn Research Institute, Bangkok, Thailand.
Daranee ChokchaichamnankitLaboratory of Biochemistry, Chulabhorn Research Institute, Bangkok, Thailand.
Kanokwan MingkwanDivision of Surgery, Sapphasitthiprasong Hospital, Ubon Ratchathani, Thailand.
Virat LuevisadpibulDivision of Information and Technology, Ubonrak Thonburi Hospital, Ubon Ratchathani, Thailand.
Chantragan SrisomsapLaboratory of Biochemistry, Chulabhorn Research Institute, Bangkok, Thailand.
Somchai ChutipongtanatePediatric Translational Research Unit, Department of Pediatrics, Faculty of Medicine Ramathibodi Hospital, Mahidol University, Bangkok, Thailand.
Jisnuson SvastiLaboratory of Biochemistry, Chulabhorn Research Institute, Bangkok, Thailand.
Voraratt ChampattanachaiLaboratory of Biochemistry, Chulabhorn Research Institute, Bangkok, Thailand. voraratt@cri.or.th.ORCID http://orcid.org/0000-0002-4287-318X

Funding

Thailand Science Research and Innovation (TSRI), Chulabhorn Research Institute 36821/4274352
6 · The paper itself

Abstract

backgroundColorectal cancer (CRC) is one of the major causes of cancer-related death worldwide. Although commercial biomarkers of CRC are currently available, they are still lacking in terms of sensitivity and specificity; thus, searching for reliable blood-based biomarkers are important for the primary screening of CRC.

methodsPlasma samples of patients with non-metastatic (NM) and metastatic (M) CRC and healthy controls were fractionated using MARS-14 immunoaffinity chromatography. The flow-through and elute fractions representing low- and high-abundant proteins, respectively, were analyzed by label-free quantitative proteomics mass spectrometry. The functional analysis of the proteins with greater than 1.5-fold differential expression level between the CRC and the healthy control groups were analyzed for their biological processes and molecular functions. In addition, the levels of plasma proteins showing large alterations in CRC patients were confirmed by immunoblotting using two independent cohorts. Moreover, receiver operating characteristic (ROC) curve analysis was performed for individual and combinations of biomarker candidates so as to evaluate the diagnostic performance of biomarker candidates.

resultsFrom 163 refined identifications, five proteins were up-regulated and two proteins were down-regulated in NM-CRC while eight proteins were up-regulated and three proteins were down-regulated in M-CRC, respectively. Altered plasma proteins in NM-CRC were mainly involved in complement activation, while those in M-CRC were clustered in acute-phase response, complement activation, and inflammatory response. Results from the study- and validation-cohorts indicate that the levels of leucine-rich alpha-2-glycoprotein-1(LRG), complement component C9 (C9), alpha-1-acid glycoprotein 1 (AGP1), and alpha-1-antitrypsin (A1AT) were statistically increased, while fibronectin (FN) level was statistically decreased in CRC patients compared to healthy controls, with most alterations found in a metastatic stage-dependent manner. ROC analysis revealed that FN exhibited the best diagnostic performance to discriminate CRC patients and healthy controls while AGP1 showed the best discrimination between the disease stages in both cohorts. The combined biomarker candidates, FN + A1AT + AGP1, exhibited perfect discriminatory power to discriminate between the CRC population and healthy controls whereas LRG + A1AT + AGP1 was likely to be the best panel to discriminate the metastatic stages in both cohorts.

conclusionsThis study identified and quantified distinct plasma proteome profiles of CRC patients. Selected CRC biomarker candidates including FN, LRG, C9, A1AT, and AGP1 may be further applied for screening larger cohorts including disease groups from other types of cancer or other diseases.

Indexed as

Affinity chromatographyblood-based biomarkerscolorectal cancerlabel-free quantitative proteomicsMARS-14

Identifiers

PMID37024778
PMCPMC10077704

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.