Evidence map›Paper›PMID 37030649›Full record

ArticleJournal of molecular biology2023

Double-Transmembrane Domain of SNAREs Decelerates the Fusion by Increasing the Protein-Lipid Mismatch.

Bing Bu, Zhiqi Tian, Dechang Li, Kai Zhang, Wei Chen, Baohua Ji, Jiajie Diao

Open access · greenAbstract read
In one paragraph

Article in Journal of molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Bing BuInstitute of Biomedical Engineering and Health Sciences, Changzhou University, Changzhou, Jiangsu 213164, China.
Zhiqi TianDepartment of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45267, USA.
Dechang LiInstitute of Applied Mechanics, Department of Engineering Mechanics, Zhejiang University, Hangzhou 310027, China. Electronic address: dcli@zju.edu.cn.
Kai ZhangDepartment of Biochemistry, University of Illinois, Urbana-Champaign, Illinois 61801, USA.
Wei ChenDepartment of Cell Biology and Department of Cardiology of the Second Affiliated Hospital, Zhejiang University School of Medicine, Zhejiang University, Hangzhou 310058, China.
Baohua JiInstitute of Applied Mechanics, Department of Engineering Mechanics, Zhejiang University, Hangzhou 310027, China.
Jiajie DiaoDepartment of Cancer Biology, University of Cincinnati College of Medicine, Cincinnati, OH 45267, USA. Electronic address: jiajie.diao@uc.edu.
University of Cincinnati Medical Center · USZhejiang University · CNChangzhou University · CNSecond Affiliated Hospital of Zhejiang University · CNUniversity of Illinois Urbana-Champaign · US

Funding

The crosstalk of organelles involved in autophagosome biogenesisR35GM128837 · NIGMS · UNIVERSITY OF CINCINNATI · PI Jiajie Diao · 2018 to 2026
$3.3M
NIGMS NIH HHS R35 GM128837
6 · The paper itself

Abstract

SNARE is the essential mediator of membrane fusion that highly relies on the molecular structure of SNAREs. For instance, the protein syntaxin-1 involved in neuronal SNAREs, has a single transmembrane domain (sTMD) leading to fast fusion, while the syntaxin 17 has a V-shape double TMDs (dTMDs), taking part in the autophagosome maturation. However, it is not clear how the TMD structure influences the fusion process. Here, we demonstrate that the dTMDs significantly reduce fusion rate compared with the sTMD by using an in vitro reconstitution system. Through theoretical analysis, we reveal that the V-shape dTMDs can significantly increase protein-lipid mismatch, thereby raising the energy barrier of the fusion, and that increasing the number of SNAREs can reduce the energy barrier or protein-lipid mismatch. This study provides a physicochemical mechanistic understanding of SNARE-regulated membrane fusion.

Indexed as

Membrane FusionSNARE ProteinsLipidsMutationProtein DomainsLipidsSNARE Proteinsmembrane fusionprotein-lipid mismatchtransmembrane domain

Identifiers

PMID37030649
PMCPMC10247502
OpenAlexW4362704310

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.