Evidence map›Paper›PMID 37031338›Full record

ArticleScientific reports2023

Live 4D-OCT denoising with self-supervised deep learning.

Jonas Nienhaus, Philipp Matten, Anja Britten, Julius Scherer, Eva Höck, Alexander Freytag, Wolfgang Drexler, Rainer A Leitgeb, Thomas Schlegl, Tilman Schmoll

Abstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jonas NienhausCenter for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria. jonas.nienhaus@meduniwien.ac.at.
Philipp MattenCenter for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria.
Anja BrittenCenter for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria.
Julius SchererCenter for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria.
Eva HöckCarl Zeiss AG, Jena, Germany.
Alexander FreytagCarl Zeiss AG, Jena, Germany.
Wolfgang DrexlerCenter for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria.
Rainer A LeitgebCenter for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria.
Thomas SchleglCenter for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria.
Tilman SchmollCenter for Medical Physics and Biomedical Engineering, Medical University of Vienna, Vienna, Austria.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

By providing three-dimensional visualization of tissues and instruments at high resolution, live volumetric optical coherence tomography (4D-OCT) has the potential to revolutionize ophthalmic surgery. However, the necessary imaging speed is accompanied by increased noise levels. A high data rate and the requirement for minimal latency impose major limitations for real-time noise reduction. In this work, we propose a low complexity neural network for denoising, directly incorporated into the image reconstruction pipeline of a microscope-integrated 4D-OCT prototype with an A-scan rate of 1.2 MHz. For this purpose, we trained a blind-spot network on unpaired OCT images using a self-supervised learning approach. With an optimized U-Net, only a few milliseconds of additional latency were introduced. Simultaneously, these architectural adaptations improved the numerical denoising performance compared to the basic setup, outperforming non-local filtering algorithms. Layers and edges of anatomical structures in B-scans were better preserved than with Gaussian filtering despite comparable processing time. By comparing scenes with and without denoising employed, we show that neural networks can be used to improve visual appearance of volumetric renderings in real time. Enhancing the rendering quality is an important step for the clinical acceptance and translation of 4D-OCT as an intra-surgical guidance tool.

Indexed as

Deep LearningAlgorithmsImage Processing, Computer-AssistedNeural Networks, ComputerSignal-To-Noise RatioTomography, Optical Coherence

Identifiers

PMID37031338
PMCPMC10082772

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.