Evidence map›Paper›PMID 37043489›Full record

ArticlePLoS neglected tropical diseases2023

Antigen discovery by bioinformatics analysis and peptide microarray for the diagnosis of cystic echinococcosis.

Gherard Batisti Biffignandi, Ambra Vola, Davide Sassera, Saeid Najafi-Fard, Maria Angeles Gomez Morales, Enrico Brunetti, Antonella Teggi, Delia Goletti, Linda Petrone, Francesca Tamarozzi

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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  4. Limited value of current and newFrontiers in parasitology · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 6 institutions in 1 country.

Gherard Batisti BiffignandiDepartment of Clinical-Surgical, Diagnostic and Pediatric Sciences, University of Pavia, Pavia, Italy.
Ambra VolaMicrobiology and Virology Unit, Diagnostic Medicine Department, IRCCS San Matteo Hospital Foundation, Pavia, Italy.
Davide SasseraDepartment of Biology and Biotechnology "L.Spallanzani", University of Pavia, Pavia, Italy.
Saeid Najafi-FardTranslational Research Unit, National Institute for Infectious Diseases (INMI) "Lazzaro Spallanzani"-IRCCS, Rome, Italy.
Maria Angeles Gomez MoralesFoodborne and Neglected Parasitoses Unit, Department of Infectious Diseases, Istituto Superiore di Sanità, Rome, Italy.
Enrico BrunettiDepartment of Clinical-Surgical, Diagnostic and Pediatric Sciences, University of Pavia, Pavia, Italy.
Antonella TeggiDepartment of Infectious and Tropical Diseases, Sant'Andrea Hospital University of Rome "Sapienza", Rome, Italy.
Delia GolettiTranslational Research Unit, National Institute for Infectious Diseases (INMI) "Lazzaro Spallanzani"-IRCCS, Rome, Italy.
Linda PetroneTranslational Research Unit, National Institute for Infectious Diseases (INMI) "Lazzaro Spallanzani"-IRCCS, Rome, Italy.ORCID 0000-0002-2593-3478
Francesca TamarozziDepartment of Infectious-Tropical Diseases and Microbiology, IRCCS Sacro Cuore Don Calabria Hospital, Negrar di Valpolicella, Verona, Italy.
Istituto Nazionale per le Malattie Infettive Lazzaro Spallanzani · ITUniversity of Pavia · ITAzienda Ospedaliera Sant'Andrea · ITIstituti di Ricovero e Cura a Carattere Scientifico · ITIstituto Superiore di Sanità · ITOspedale Sacro Cuore Don Calabria · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundCystic echinococcosis (CE), caused by Echinococcus granulosus sensu lato, is a neglected zoonosis. Its diagnosis relies on imaging, supported by serology, while only imaging is useful for staging and follow-up. Since diagnostic tools and expertise are not widely available, new accurate and easily implementable assays for the diagnosis and follow-up of CE are highly needed. METHODOLOGY/PRINCIPAL

findingsWe aimed to identify new E. granulosus antigens through a bioinformatics selection applied to the parasite genome, followed by peptide microarray screening and validation in ELISA, using independent panels of sera from patients with hepatic CE and clinically relevant controls. From 950 proteins selected in silico, 2,379 peptides were evaluated by microarray for IgG reactivity and eight candidates selected for validation. Reactivity to one peptide was significantly higher in the CE group (p = 0.044), but had suboptimal diagnostic accuracy. CONCLUSIONS/SIGNIFICANCE: Here we performed bioinformatics analysis and peptide microarray for antigen discovery, useful for the diagnosis of CE. Eight candidates were selected and validated. Reactivity to one peptide associated to CE but had suboptimal diagnostic accuracy. Importantly, the database developed in this study may be used to identify other antigenic candidates for CE diagnosis and follow-up.

Indexed as

EchinococcosisEchinococcus granulosusAnimalsAntigens, HelminthComputational BiologyEnzyme-Linked Immunosorbent AssayHumansPeptidesAntigens, HelminthPeptides

Identifiers

PMID37043489
PMCPMC10096192
OpenAlexW4365136007

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.