Evidence map›Paper›PMID 37056744›Full record

ArticleFrontiers in microbiology2023

Patterns of within-host spread of

Sandeep J Joseph, Sankhya Bommana, Noa Ziklo, Mike Kama, Deborah Dean, Timothy D Read

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
  3. Putative azithromycin resistance mutations inAntimicrobial agents and chemotherapy · 2026
    Article
  4. Whole-genome automated assembly pipeline forNAR genomics and bioinformatics · 2025
    Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 2 countries.

Sandeep J JosephDivision of STD Prevention, Centers for Disease Control and Prevention, Atlanta, GA, United States.
Sankhya BommanaDepartment of Pediatrics, University of California, San Francisco, Oakland, CA, United States.
Noa ZikloDepartment of Pediatrics, University of California, San Francisco, Oakland, CA, United States.
Mike KamaMinistry of Health and Medical Services, Suva, Fiji.
Deborah DeanDepartment of Pediatrics, University of California, San Francisco, Oakland, CA, United States.
Timothy D ReadDivision of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA, United States.
University of California, San Francisco · USCenters for Disease Control and Prevention · USEmory University · USMinistry Of Health · FJUniversity of California, Berkeley · US

Funding

Natural History of C. trachomatis urogenital and rectal infectionsR01AI151075 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DEAN, DEBORAH ANNE, READ, TIMOTHY D. · 2020 to 2024
$4.0M
C. trachomatis within-host genomic diversity and transmission between female anatomic sitesR21AI138079 · NIAID · EMORY UNIVERSITY · PI DEAN, DEBORAH ANNE, READ, TIMOTHY D. · 2019 to 2020
$469k
NIAID NIH HHS R01 AI151075NIAID NIH HHS R21 AI138079
6 · The paper itself

Abstract

Introduction: Methods: We used RNA-bait enrichment and whole-genome sequencing to compare rectal, vaginal and endocervical samples collected at the same time from 26 study participants who attended Fijian Ministry of Health and Medical Services clinics and tested positive for Results: The 78 Discussion: The absence of large numbers of fixed SNPs between

Indexed as

chlamydiaeChlamydia trachomatissexually transmitted diseasessingle nucleotide polymorphismssingle variable polymorphisms

Identifiers

PMID37056744
PMCPMC10086254
OpenAlexW4361222971

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.