Evidence map›Paper›PMID 37059705›Full record

ArticleNature communications2023

Nucleotide binding halts diffusion of the eukaryotic replicative helicase during activation.

Daniel Ramírez Montero, Humberto Sánchez, Edo van Veen, Theo van Laar, Belén Solano, John F X Diffley, Nynke H Dekker

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Unlicensed origin DNA melting by MCV and SV40 polyomavirus LT proteins is independent of ATP-dependent helicase activity.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Daniel Ramírez MonteroDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, The Netherlands.ORCID 0000-0003-3198-9811
Humberto SánchezDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, The Netherlands.ORCID 0000-0003-2137-1233
Edo van VeenDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, The Netherlands.ORCID 0000-0003-3509-8151
Theo van LaarDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, The Netherlands.ORCID 0000-0002-0990-6234
Belén SolanoDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, The Netherlands.
John F X DiffleyChromosome Replication Laboratory, Francis Crick Institute, London, UK. john.diffley@crick.ac.uk.ORCID 0000-0001-5184-7680
Nynke H DekkerDepartment of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, Delft, The Netherlands. n.h.dekker@tudelft.nl.ORCID 0000-0003-4029-0973
Delft University of Technology · NLThe Francis Crick Institute · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The eukaryotic replicative helicase CMG centrally orchestrates the replisome and leads the way at the front of replication forks. Understanding the motion of CMG on the DNA is therefore key to our understanding of DNA replication. In vivo, CMG is assembled and activated through a cell-cycle-regulated mechanism involving 36 polypeptides that has been reconstituted from purified proteins in ensemble biochemical studies. Conversely, single-molecule studies of CMG motion have thus far relied on pre-formed CMG assembled through an unknown mechanism upon overexpression of individual constituents. Here, we report the activation of CMG fully reconstituted from purified yeast proteins and the quantification of its motion at the single-molecule level. We observe that CMG can move on DNA in two ways: by unidirectional translocation and by diffusion. We demonstrate that CMG preferentially exhibits unidirectional translocation in the presence of ATP, whereas it preferentially exhibits diffusive motion in the absence of ATP. We also demonstrate that nucleotide binding halts diffusive CMG independently of DNA melting. Taken together, our findings support a mechanism by which nucleotide binding allows newly assembled CMG to engage with the DNA within its central channel, halting its diffusion and facilitating the initial DNA melting required to initiate DNA replication.

Indexed as

EukaryotaNucleotidesAdenosine TriphosphateDNADNA HelicasesDNA ReplicationAdenosine TriphosphateDNADNA HelicasesNucleotides

Identifiers

PMID37059705
PMCPMC10104875
OpenAlexW4365513381

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.