Evidence map›Paper›PMID 37065447›Full record

ReviewFrontiers in molecular biosciences2023

Advances and challenges in CRISPR-based real-time imaging of dynamic genome organization.

Jenna Thuma, Yu-Chieh Chung, Li-Chun Tu

Open access · goldAbstract readReview
In one paragraph

Review in Frontiers in molecular biosciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Jenna ThumaDepartment of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH, United States.
Yu-Chieh ChungDepartment of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH, United States.
Li-Chun TuDepartment of Biological Chemistry and Pharmacology, The Ohio State University, Columbus, OH, United States.
The Ohio State University · US

Funding

Deciphering real-time dynamics of the human genome organization in response to DNA damage and gene expressionR00GM126810 · NIGMS · OHIO STATE UNIVERSITY · PI TU, LI-CHUN · 2019 to 2021
$747k
NIGMS NIH HHS R00 GM126810
6 · The paper itself

Abstract

Nuclear chromosome compaction is non-random and dynamic. The spatial distance among genomic elements instantly modulates transcription. Visualization of the genome organization in the cell nucleus is essential to understand nuclear function. In addition to cell type-dependent organization, high-resolution 3D imaging shows heterogeneous compaction of chromatin organization among the same cell type. Questions remain to be answered if these structural variations were the snapshots of dynamic organization at different time points and if they are functionally different. Live-cell imaging has provided unique insights into dynamic genome organization at short (milliseconds) and long (hours) time scales. The recent development of CRISPR-based imaging opened windows for studying dynamic chromatin organization in single cells in real time. Here we highlight these CRISPR-based imaging techniques and discuss their advances and challenges as a powerful live-cell imaging method that poses high potential to generate paradigm-shifting discoveries and reveal functional implications of dynamic chromatin organization.

Indexed as

chromatin dynamicschromosome conformationCRISPRgenome organizationlive-cell imagingsingle-particle tracking

Identifiers

PMID37065447
PMCPMC10102487
OpenAlexW4362469407

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.