Evidence map›Paper›PMID 37076488›Full record

ArticleNature communications2023

The structural basis of tRNA recognition by arginyl-tRNA-protein transferase.

Thilini Abeywansha, Wei Huang, Xuan Ye, Allison Nawrocki, Xin Lan, Eckhard Jankowsky, Derek J Taylor, Yi Zhang

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Genes near tRNAs are enriched in translational machinery.bioRxiv : the preprint server for biology · 2026
    Article
  6. Review
  7. Review
  8. Article
  9. Review
  10. Article
  11. N-degron pathways.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Thilini Abeywansha *Department of Biochemistry, Case Western Reserve University, Cleveland, OH, 44106, USA.
Wei Huang *Department of Pharmacology, Case Western Reserve University, Cleveland, OH, 44106, USA.ORCID 0000-0003-2097-8148
Xuan YeDepartment of Biochemistry, Case Western Reserve University, Cleveland, OH, 44106, USA.ORCID 0000-0002-3157-7537
Allison NawrockiDepartment of Biochemistry, Case Western Reserve University, Cleveland, OH, 44106, USA.
Xin LanDepartment of Biochemistry, Case Western Reserve University, Cleveland, OH, 44106, USA.
Eckhard JankowskyDepartment of Biochemistry, Case Western Reserve University, Cleveland, OH, 44106, USA.ORCID 0000-0001-7677-7412
Derek J TaylorDepartment of Biochemistry, Case Western Reserve University, Cleveland, OH, 44106, USA. djt36@case.edu.ORCID 0000-0001-9932-1856
Yi ZhangDepartment of Biochemistry, Case Western Reserve University, Cleveland, OH, 44106, USA. yi.zhang26@case.edu.ORCID 0000-0001-8170-9983
Case Western Reserve University · US

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI Amar Desai · 1987 to 2026
$142.3M
Clinical and Translational Science Collaborative of ClevelandUL1TR002548 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI MCCOMSEY, GRACE A · 2018 to 2022
$35.5M
Chemical, Structural and Cell-Signaling Interrogation of 15-Prostanglandin Dehydrogenase in Tissue Repair and RegenerationRM1GM142002 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MARKOWITZ, SANFORD D., PIEPER, ANDREW A · 2021 to 2025
$6.9M
Enzymes and enzyme complexes in RNA metabolismR35GM118088 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI JANKOWSKY, ECKHARD · 2016 to 2022
$4.3M
Structural and molecular determinants of protein phosphatase 2A in Alzheimer's DiseaseR01CA240993 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NARLA, GOUTHAM, TAYLOR, DEREK JAMES · 2019 to 2023
$3.4M
Molecular interactions and regulatory events of telomere proteinsR01GM133841 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI TAYLOR, DEREK JAMES · 2019 to 2022
$1.7M
p62 in Cancer: Mechanism and RegulationR00CA241301 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI ZHANG, YI · 2021 to 2023
$747k
NCATS NIH HHS UL1 TR002548NCI NIH HHS HHSN261200800001ENCI NIH HHS P30 CA043703NCI NIH HHS R00 CA241301NCI NIH HHS R01 CA240993NIGMS NIH HHS R01 GM133841NIGMS NIH HHS R35 GM118088NIGMS NIH HHS RM1 GM142002
6 · The paper itself

Abstract

Arginyl-tRNA-protein transferase 1 (ATE1) is a master regulator of protein homeostasis, stress response, cytoskeleton maintenance, and cell migration. The diverse functions of ATE1 arise from its unique enzymatic activity to covalently attach an arginine onto its protein substrates in a tRNA-dependent manner. However, how ATE1 (and other aminoacyl-tRNA transferases) hijacks tRNA from the highly efficient ribosomal protein synthesis pathways and catalyzes the arginylation reaction remains a mystery. Here, we describe the three-dimensional structures of Saccharomyces cerevisiae ATE1 with and without its tRNA cofactor. Importantly, the putative substrate binding domain of ATE1 adopts a previously uncharacterized fold that contains an atypical zinc-binding site critical for ATE1 stability and function. The unique recognition of tRNA

Indexed as

AminoacyltransferasesArginineCell MovementProteinsRNA, TransferSaccharomyces cerevisiaeAminoacyltransferasesArginineProteinsRNA, Transfer

Identifiers

PMID37076488
PMCPMC10115844
OpenAlexW4366405452

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.