Evidence map›Paper›PMID 37080976›Full record

ArticleNature communications2023

Identifying high-impact variants and genes in exomes of Ashkenazi Jewish inflammatory bowel disease patients.

Yiming Wu, Kyle Gettler, Meltem Ece Kars, Mamta Giri, Dalin Li, Cigdem Sevim Bayrak, Peng Zhang, Aayushee Jain, Patrick Maffucci, Ksenija Sabic and 21 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 18 institutions in 4 countries.

Yiming WuThe Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Kyle Gettler *Department of Genetics, Yale University, New Haven, CT, USA.
Meltem Ece Kars *The Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0001-5922-5608
Mamta GiriDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Dalin LiTranslational Genomics Unit, F. Widjaja Foundation Inflammatory Bowel and Immunobiology Research Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA.ORCID 0000-0003-4738-0074
Cigdem Sevim BayrakThe Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-3883-5535
Peng ZhangSt. Giles Laboratory of Human Genetics of Infectious Diseases, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-6129-567X
Aayushee JainThe Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-5018-3234
Patrick MaffucciImmunology Institute, Graduate School, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Ksenija SabicDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Tielman Van VleckThe Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-4488-8174
Girish NadkarniThe Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0001-6319-4314
Lee A DensonDepartment of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.ORCID 0000-0001-8045-7198
Harry OstrerDepartment of Pathology, Albert Einstein College of Medicine, New York, NY, USA.ORCID 0000-0002-2209-5376
Adam P LevineDivision of Medicine, University College London (UCL), London, UK.ORCID 0000-0003-1333-9938
Elena R SchiffDivision of Medicine, University College London (UCL), London, UK.ORCID 0000-0002-9848-1302
Anthony W SegalDivision of Medicine, University College London (UCL), London, UK.ORCID 0000-0001-7602-9043
Subra KugathasanDepartment of Pediatrics, Emory University, Atlanta, GA, USA.ORCID 0000-0002-8686-4189
Peter D StensonInstitute of Medical Genetics, Cardiff University, Cardiff, UK.
David N CooperInstitute of Medical Genetics, Cardiff University, Cardiff, UK.ORCID 0000-0002-8943-8484
L Philip SchummDepartment of Public Health Sciences, University of Chicago, Chicago, IL, USA.
Scott SnapperDivision of Gastroenterology, Hepatology and Nutrition, Oncology Boston Children's Hospital, Boston, MA, USA.ORCID 0000-0003-0267-4247
Mark J DalyInstitute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, Finland.
Talin HarituniansTranslational Genomics Unit, F. Widjaja Foundation Inflammatory Bowel and Immunobiology Research Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA.ORCID 0000-0002-9005-7750
Richard H DuerrDivision of Gastroenterology, Hepatology and Nutrition, Department of Medicine, University of Pittsburgh School of Medicine, Pittsburgh, PA, USA.ORCID 0000-0001-6586-3905
Mark S SilverbergInflammatory Bowel Disease Centre, Mount Sinai Hospital, Toronto, Ontario, Canada.
John D RiouxResearch Center, Montreal Heart Institute, Montréal, Québec, Canada.
Steven R BrantDivision of Gastroenterology, Department of Medicine, Rutgers Robert Wood Johnson Medical School, New Brunswick, NJ, USA.
Dermot P B McGovernTranslational Genomics Unit, F. Widjaja Foundation Inflammatory Bowel and Immunobiology Research Institute, Cedars-Sinai Medical Center, Los Angeles, CA, USA.ORCID 0000-0001-5621-759X
Judy H ChoThe Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0002-7959-0466
Yuval ItanThe Charles Bronfman Institute for Personalized Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, USA. yuval.itan@mssm.edu.ORCID 0000-0003-4966-3238
Icahn School of Medicine at Mount Sinai · USCedars-Sinai Medical Center · USCardiff University · GBRockefeller University · USUniversity College London · GBAlbert Einstein College of Medicine · USBoston Children's Hospital · USBroad Institute · USChicago Department of Public Health · USCincinnati Children's Hospital Medical Center · USEmory University · USMassachusetts General Hospital · USMontreal Heart Institute · CAMoorfields Eye Hospital NHS Foundation Trust · GBMount Sinai Hospital · CARutgers, The State University of New Jersey · USUniversity of Pittsburgh · USYale University · US

Funding

Precision IBD via genetics and genomics: integrating International and multi-omic datasets, expanding studies in diverse populations, and defining mechanisms of unmet clinical needs in IBDU24DK062429 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Ling-shiang Chuang, Ron Do · 2017 to 2026
$13.9M
Yale University Inflammatory Bowel Disease Genetics Research CenterU01DK062422 · NIDDK · YALE UNIVERSITY · PI Ling-shiang Chuang · 2002 to 2026
$10.8M
IBD Gene Mapping by Clinical and Population SubsetsU01DK062431 · NIDDK · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI Steven R Brant · 2002 to 2026
$10.7M
NIDDK IBD Genetics Consortium Genetic Research CenterU01DK062420 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI DUERR, RICHARD H · 2002 to 2021
$7.8M
Impact of Genetic Variability on Cellular Pathways and Host-Microbiome InteractioU01DK062423 · NIDDK · SINAI HEALTH SYSTEM · PI MARK S. SILVERBERG · 2002 to 2026
$7.5M
Intestinal single cell analyses and population differences in innate immunity in Crohn's disease drive treatment response and clinical heterogeneity: towards Precision IBDR01DK123758 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CHO, JUDY H. · 2020 to 2023
$2.9M
COVID and Translational Science supercomputer (CATS)S10OD030463 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2021 to 2021
$2.0M
Big Omics Data Engine 2 SupercomputerS10OD026880 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2019 to 2019
$2.0M
Identifying population-specific IBD-associated mutations, genes and pathwaysR01DK123530 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ITAN, YUVAL · 2019 to 2021
$1.0M
NIDDK NIH HHS R01 DK123530NIDDK NIH HHS R01 DK123758NIDDK NIH HHS U01 DK062420NIDDK NIH HHS U01 DK062422NIDDK NIH HHS U01 DK062423NIDDK NIH HHS U01 DK062431NIDDK NIH HHS U24 DK062429NIH HHS S10 OD026880NIH HHS S10 OD030463
6 · The paper itself

Abstract

Inflammatory bowel disease (IBD) is a group of chronic digestive tract inflammatory conditions whose genetic etiology is still poorly understood. The incidence of IBD is particularly high among Ashkenazi Jews. Here, we identify 8 novel and plausible IBD-causing genes from the exomes of 4453 genetically identified Ashkenazi Jewish IBD cases (1734) and controls (2719). Various biological pathway analyses are performed, along with bulk and single-cell RNA sequencing, to demonstrate the likely physiological relatedness of the novel genes to IBD. Importantly, we demonstrate that the rare and high impact genetic architecture of Ashkenazi Jewish adult IBD displays significant overlap with very early onset-IBD genetics. Moreover, by performing biobank phenome-wide analyses, we find that IBD genes have pleiotropic effects that involve other immune responses. Finally, we show that polygenic risk score analyses based on genome-wide high impact variants have high power to predict IBD susceptibility.

Indexed as

Inflammatory Bowel DiseasesJewsAdultExomeGenetic Predisposition to DiseaseHumansRisk Assessment

Identifiers

PMID37080976
PMCPMC10119186
OpenAlexW4366548122

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.