Evidence map›Paper›PMID 37085480›Full record

ArticleNature communications2023

Influenza virus mRNAs encode determinants for nuclear export via the cellular TREX-2 complex.

Prasanna Bhat, Vasilisa Aksenova, Matthew Gazzara, Emily A Rex, Sadaf Aslam, Christina Haddad, Shengyan Gao, Matthew Esparza, Tolga Cagatay, Kimberly Batten and 9 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed, 1 pooled it
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 1 synthesis or guideline pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Nuclear speckles are regulatory hubs for viral and host mRNA expression during HSV-1 infection.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Influenza A virus NS1 protein mimics oncogenic PI3K resulting in isoform specific cellular redistribution and activation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Article
  13. Article
  14. Review
  15. Structures and mRNP remodeling mechanism of the TREX-2 complex.Structure (London, England : 1993) · 2025
    Article
  16. Article
  17. Nuclear mRNA export.Acta biochimica et biophysica Sinica · 2024
    Review
  18. Advances in the understanding of nuclear pore complexes in human diseases.Journal of cancer research and clinical oncology · 2024
    Review
  19. Inhibition of mRNA nuclear export promotes SARS-CoV-2 pathogenesis.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 7 institutions in 1 country.

Prasanna BhatDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.ORCID 0000-0003-4759-3977
Vasilisa AksenovaDivision of Molecular and Cellular Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID 0000-0001-7325-3453
Matthew GazzaraDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, 19104, USA.ORCID 0000-0001-7710-4551
Emily A RexDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Sadaf AslamDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.ORCID 0000-0002-3748-4227
Christina HaddadDepartment of Chemistry, Case Western Reserve University, Cleveland, OH, 44106, USA.
Shengyan GaoDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Matthew EsparzaDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Tolga CagatayDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Kimberly BattenDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.
Sara S El ZahedDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.ORCID 0000-0002-0039-1780
Alexei ArnaoutovDivision of Molecular and Cellular Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID 0000-0001-7647-7217
Hualin ZhongDepartment of Biological Sciences, Hunter College, New York, NY, 10065, USA.
Jerry W ShayDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA.ORCID 0000-0001-5052-0627
Blanton S TolbertDepartment of Chemistry, Case Western Reserve University, Cleveland, OH, 44106, USA.ORCID 0000-0003-2456-0443
Mary DassoDivision of Molecular and Cellular Biology, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD, 20892, USA.ORCID 0000-0002-5410-1371
Kristen W LynchDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Adolfo García-SastreDepartment of Microbiology, Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.ORCID 0000-0002-6551-1827
Beatriz M A FontouraDepartment of Cell Biology, University of Texas Southwestern Medical Center, Dallas, TX, 75390, USA. beatriz.fontoura@utsouthwestern.edu.ORCID 0000-0001-8468-5315
The University of Texas Southwestern Medical Center · USIcahn School of Medicine at Mount Sinai · USNational Institutes of Health · USCase Western Reserve University · USUniversity of Pennsylvania · USHunter College · USSouthwestern Medical Center · US

Funding

NIAID Centers of Excellence for Influenza Research and Response: Universal Influenza Vaccine Research Activities75N93021C00014 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI GARCIA-SASTRE, ADOLFO · 2021 to 2025
$62.6M
SARS-CoV adaptations through a Systems Biology Lens (SYBIL)U19AI135972 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Adolfo Garcia-Sastre · 2018 to 2026
$27.2M
Mitotic roles of the Nuclear Transport MachineryZIAHD008954 · NICHD · EUNICE KENNEDY SHRIVER NATIONAL INSTITUTE OF CHILD HEALTH & HUMAN DEVELOPMENT · PI DASSO, MARY C. · 2015 to 2025
$25.3M
Signal-Induced Regulation of Alternative RNA ProcessingR35GM118048 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI KRISTEN W LYNCH · 2016 to 2026
$6.6M
Splicing and Nuclear Transport of Influenza Virus mRNAR01AI125524 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI COBB, MELANIE H., FONTOURA, BEATRIZ MA · 2016 to 2025
$5.6M
Virulence Factor at the Interface of Viral and Cellular mRNA Nuclear ExportR01AI154635 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI Beatriz MA Fontoura · 2020 to 2026
$5.1M
Molecular Diversity Of N-cadherinZ01HD008754 · NICHD · CHILD HEALTH AND HUMAN DEVELOPMENT · PI LEE, CHI-HON · 2002 to 2005
–
Intramural NIH HHS Z01 HD008754NIAID NIH HHS 75N93021C00014NIAID NIH HHS R01 AI125524NIAID NIH HHS R01 AI154635NIAID NIH HHS U19 AI135972NIGMS NIH HHS R35 GM118048
6 · The paper itself

Abstract

Nuclear export of influenza A virus (IAV) mRNAs occurs through the nuclear pore complex (NPC). Using the Auxin-Induced Degron (AID) system to rapidly degrade proteins, we show that among the nucleoporins localized at the nucleoplasmic side of the NPC, TPR is the key nucleoporin required for nuclear export of influenza virus mRNAs. TPR recruits the TRanscription and EXport complex (TREX)-2 to the NPC for exporting a subset of cellular mRNAs. By degrading components of the TREX-2 complex (GANP, Germinal-center Associated Nuclear Protein; PCID2, PCI domain containing 2), we show that influenza mRNAs require the TREX-2 complex for nuclear export and replication. Furthermore, we found that cellular mRNAs whose export is dependent on GANP have a small number of exons, a high mean exon length, long 3' UTR, and low GC content. Some of these features are shared by influenza virus mRNAs. Additionally, we identified a 45 nucleotide RNA signal from influenza virus HA mRNA that is sufficient to mediate GANP-dependent mRNA export. Thus, we report a role for the TREX-2 complex in nuclear export of influenza mRNAs and identified RNA determinants associated with the TREX-2-dependent mRNA export.

Indexed as

Active Transport, Cell NucleusInfluenza, HumanOrthomyxoviridaeRNA TransportCell NucleusExodeoxyribonucleasesHumansNuclear PoreNuclear Pore Complex ProteinsNuclear ProteinsPhosphoproteinsRNA, MessengerExodeoxyribonucleasesNuclear Pore Complex ProteinsNuclear ProteinsPCID2 protein, humanPhosphoproteinsRNA, MessengerTREX2 protein, human

Identifiers

PMID37085480
PMCPMC10121598
OpenAlexW4366742473

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.