Evidence map›Paper›PMID 37104017›Full record

ArticleMethods and protocols2023

Identification and Characterisation of Infiltrating Immune Cells in Malignant Pleural Mesothelioma Using Spatial Transcriptomics.

Dmitrii Shek, Brian Gloss, Joey Lai, Li Ma, Hui E Zhang, Matteo S Carlino, Hema Mahajan, Adnan Nagrial, Bo Gao, Scott A Read and 1 more

Registry-linked trialOpen access · goldAbstract read
In one paragraph

Article in Methods and protocols, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04631731 (Risk Factors of Immune-ChEckpoint Inhibitors MEdiated Liver, Gastrointestinal, Endocrine and Skin Toxicity), which is not on this map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04631731 phase1 / phase2unknown statusnot on this map

Risk Factors of Immune-ChEckpoint Inhibitors MEdiated Liver, Gastrointestinal, Endocrine and Skin Toxicity

TypeinterventionalSponsorWestern Sydney Local Health DistrictRan2020 to 2025Enrolled200ConditionsLung Cancer, Nonsmall Cell, Renal Cell Carcinoma, Melanoma, Gastric CancerArmsBlood screening, Tissue screening
3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Dmitrii ShekBlacktown Clinical School, Western Sydney University, Sydney, NSW 2148, Australia.ORCID 0000-0001-9013-0842
Brian GlossWestmead Institute for Medical Research, Sydney, NSW 2145, Australia.ORCID 0000-0001-7695-4394
Joey LaiWestmead Institute for Medical Research, Sydney, NSW 2145, Australia.ORCID 0000-0001-9216-4202
Li MaWestmead Institute for Medical Research, Sydney, NSW 2145, Australia.
Hui E ZhangWestmead Institute for Medical Research, Sydney, NSW 2145, Australia.ORCID 0000-0002-4699-4237
Matteo S CarlinoBlacktown Mt Druitt Hospital, Sydney, NSW 2148, Australia.ORCID 0000-0002-7861-4104
Hema MahajanWestmead Hospital, Sydney, NSW 2145, Australia.ORCID 0000-0001-7200-9328
Adnan NagrialBlacktown Mt Druitt Hospital, Sydney, NSW 2148, Australia.ORCID 0000-0003-0275-2479
Bo GaoBlacktown Mt Druitt Hospital, Sydney, NSW 2148, Australia.ORCID 0000-0002-7881-6603
Scott A ReadBlacktown Clinical School, Western Sydney University, Sydney, NSW 2148, Australia.ORCID 0000-0001-6775-2061
Golo AhlenstielBlacktown Clinical School, Western Sydney University, Sydney, NSW 2148, Australia.ORCID 0000-0003-0026-1457
The University of Sydney · AUWestmead Institute for Medical Research · AUBlacktown & Mount Druitt Hospital · AU

Funding

Bristol Myers Squibb CA209-6KRWestern Sydney Local Health District Research and Education Network Grant 2021
6 · The paper itself

Abstract

Increasing evidence strongly supports the key role of the tumour microenvironment in response to systemic therapy, particularly immune checkpoint inhibitors (ICIs). The tumour microenvironment is a complex tapestry of immune cells, some of which can suppress T-cell immunity to negatively impact ICI therapy. The immune component of the tumour microenvironment, although poorly understood, has the potential to reveal novel insights that can impact the efficacy and safety of ICI therapy. Successful identification and validation of these factors using cutting-edge spatial and single-cell technologies may enable the development of broad acting adjunct therapies as well as personalised cancer immunotherapies in the near future. In this paper we describe a protocol built upon Visium (10x Genomics) spatial transcriptomics to map and characterise the tumour-infiltrating immune microenvironment in malignant pleural mesothelioma. Using

Indexed as

immune checkpoint inhibitorsmesotheliomaresearch protocolspatial analysis

Identifiers

PMID37104017
PMCPMC10146955
OpenAlexW4361305315

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.