Evidence map›Paper›PMID 37110517›Full record

ArticleMolecules (Basel, Switzerland)2023

A Novel Aging-Related Prognostic lncRNA Signature Correlated with Immune Cell Infiltration and Response to Immunotherapy in Breast Cancer.

Zhixin Liu, Chongkang Ren, Jinyi Cai, Baohui Yin, Jingjie Yuan, Rongjuan Ding, Wenzhuo Ming, Yunxiao Sun, Youjie Li

Open access · goldAbstract read
In one paragraph

Article in Molecules (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Zhixin LiuDepartment of Biochemistry and Molecular Biology, Binzhou Medical University, Yantai 264003, China.
Chongkang RenDepartment of Biochemistry and Molecular Biology, Binzhou Medical University, Yantai 264003, China.
Jinyi CaiDepartment of Biochemistry and Molecular Biology, Binzhou Medical University, Yantai 264003, China.
Baohui YinDepartment of Pediatrics, Yantai Affiliated Hospital of Binzhou Medical University, Yantai 264100, China.
Jingjie YuanDepartment of Biochemistry and Molecular Biology, Binzhou Medical University, Yantai 264003, China.
Rongjuan DingDepartment of Biochemistry and Molecular Biology, Binzhou Medical University, Yantai 264003, China.
Wenzhuo MingDepartment of Biochemistry and Molecular Biology, Binzhou Medical University, Yantai 264003, China.
Yunxiao SunDepartment of Pediatrics, Yantai Affiliated Hospital of Binzhou Medical University, Yantai 264100, China.
Youjie LiDepartment of Biochemistry and Molecular Biology, Binzhou Medical University, Yantai 264003, China.
Binzhou University · CNBinzhou Medical University · CN

Funding

Innovation and Entrepreneurship Training Program for College Students X202210440474, S202110440145The National Natural Science Foundation of China 81800169The Shandong Province Taishan Scholar Project ts201712067The Support Plan for Youth Entrepreneurship and Technology of Colleges and Universities in Shandong 2019KJK014
6 · The paper itself

Abstract

Breast cancer (BC) is among the most universal malignant tumors in women worldwide. Aging is a complex phenomenon, caused by a variety of factors, that plays a significant role in tumor development. Consequently, it is crucial to screen for prognostic aging-related long non-coding RNAs (lncRNAs) in BC. The BC samples from the breast-invasive carcinoma cohort were downloaded from The Cancer Genome Atlas (TCGA) database. The differential expression of aging-related lncRNAs (DEarlncRNAs) was screened by Pearson correlation analysis. Univariate Cox regression, LASSO-Cox analysis, and multivariate Cox analysis were performed to construct an aging-related lncRNA signature. The signature was validated in the GSE20685 dataset from the Gene Expression Omnibus (GEO) database. Subsequently, a nomogram was constructed to predict survival in BC patients. The accuracy of prediction performance was assessed through the time-dependent receiver operating characteristic (ROC) curves, Kaplan-Meier analysis, principal component analyses, decision curve analysis, calibration curve, and concordance index. Finally, differences in tumor mutational burden, tumor-infiltrating immune cells, and patients' response to chemotherapy and immunotherapy between the high- and low-risk score groups were explored. Analysis of the TCGA cohort revealed a six aging-related lncRNA signature consisting of MCF2L-AS1, USP30-AS1, OTUD6B-AS1, MAPT-AS1, PRR34-AS1, and DLGAP1-AS1. The time-dependent ROC curve proved the optimal predictability for prognosis in BC patients with areas under curves (AUCs) of 0.753, 0.772, and 0.722 in 1, 3, and 5 years, respectively. Patients in the low-risk group had better overall survival and significantly lower total tumor mutational burden. Meanwhile, the high-risk group had a lower proportion of tumor-killing immune cells. The low-risk group could benefit more from immunotherapy and some chemotherapeutics than the high-risk group. The aging-related lncRNA signature can provide new perspectives and methods for early BC diagnosis and therapeutic targets, especially tumor immunotherapy.

Indexed as

Breast NeoplasmsRNA, Long NoncodingAgingFemaleHumansImmunotherapyMitochondrial ProteinsPrognosisThiolester HydrolasesMitochondrial ProteinsRNA, Long NoncodingThiolester HydrolasesUsp30 protein, humanagingbreast cancercancerimmunotherapynomogramsignaturetumor mutation burden

Identifiers

PMID37110517
PMCPMC10141963
OpenAlexW4362700156

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.