Evidence map›Paper›PMID 37113133›Full record

ArticleFrontiers in cellular and infection microbiology2023

Comparative transcriptome analysis of

Alhussien M Gaber, Igor Mandric, Caroline Nitirahardjo, Helen Piontkivska, Andrew E Hillhouse, David W Threadgill, Alex Zelikovsky, Artem S Rogovskyy

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
  2. Article
  3. Strain-specific immune response patterns toInfection and immunity · 2026
    Article
  4. Transcriptomic response toMicrobiology spectrum · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. DifferentiatingInfection and immunity · 2025
    Article
  9. Infection and immunity · 2025
    Article
  10. Estimating Enzyme Expression and Metabolic Pathway Activity inJournal of computational biology : a journal of computational molecular cell biology · 2025
    Article
  11. Article
  12. Article
  13. Comparative reservoir competence ofApplied and environmental microbiology · 2024
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Alhussien M GaberDepartment of Veterinary Pathobiology, School of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, United States.
Igor MandricDepartment of Computer Science, Georgia State University, Atlanta, GA, United States.
Caroline NitirahardjoDepartment of Biological Sciences, and School of Biomedical Sciences, Kent State University, Kent, OH, United States.
Helen PiontkivskaDepartment of Biological Sciences, and School of Biomedical Sciences, Kent State University, Kent, OH, United States.
Andrew E HillhouseTexas A&M Institute for Genomics Sciences and Society, Texas A&M University, College Station, TX, United States.
David W ThreadgillTexas A&M Institute for Genomics Sciences and Society, Texas A&M University, College Station, TX, United States.
Alex ZelikovskyDepartment of Computer Science, Georgia State University, Atlanta, GA, United States.
Artem S RogovskyyDepartment of Veterinary Pathobiology, School of Veterinary Medicine and Biomedical Sciences, Texas A&M University, College Station, TX, United States.
Texas A&M University · USGeorgia State University · USKent State University · US

Funding

Comparative Biomedical Research Training for VeterinariansT32OD011083 · OD · TEXAS A&M AGRILIFE RESEARCH · PI ALBERT MULENGA · 2012 to 2026
$4.8M
Characterization of transcriptome changes in diet-induced progression to METS/T2D to identify earliest and sex-specific neurodegenerative foci for AD developmentR21AG064479 · NIA · UNIVERSITY OF FLORIDA · PI CASADESUS, GEMMA · 2019 to 2020
$598k
Chemo-neoepitopes as novel immunotherapy for triple negative breast cancerR21CA241044 · NCI · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI IONOV, YURIJ, MANDOIU, ION · 2021 to 2021
$467k
Development of murine model of neuroborreliosisR03AI135159 · NIAID · TEXAS A&M AGRILIFE RESEARCH · PI ROGOVSKY, ARTEM S · 2018 to 2019
$149k
NCI NIH HHS R21 CA241044NIAID NIH HHS R03 AI135159NIA NIH HHS R21 AG064479NIH HHS T32 OD011083
6 · The paper itself

Abstract

Lyme disease (LD), the most prevalent tick-borne disease of humans in the Northern Hemisphere, is caused by the spirochetal bacterium of Importance: The bacterium

Indexed as

Borrelia burgdorferiIxodesLyme DiseaseAnimalsDisease ReservoirsGene Expression ProfilingHumansMiceMice, Inbred C3HPeromyscusTranscriptomeBorreliaBorreliella burgdorferiC3H micedifferentially expressed genesLyme borreliosisPeromyscus leucopus

Identifiers

PMID37113133
PMCPMC10126474
OpenAlexW4363651610

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.