Evidence map›Paper›PMID 37141313›Full record

ArticleScience (New York, N.Y.)2023

Discovery of target genes and pathways at GWAS loci by pooled single-cell CRISPR screens.

John A Morris, Christina Caragine, Zharko Daniloski, Júlia Domingo, Timothy Barry, Lu Lu, Kyrie Davis, Marcello Ziosi, Dafni A Glinos, Stephanie Hao and 6 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 146 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
146citing papers in PubMed, 2 pooled it
30.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

146 citing papers in PubMed, 2 syntheses or guidelines pooled it, 187 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Genome-scale perturbation signatures from primary human CD4bioRxiv : the preprint server for biology · 2026
    Article
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  7. Review
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  12. Genetic influences on haematopoiesis.Nature reviews. Genetics · 2026
    Review
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  15. Review
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  17. Article
  18. Article
  19. Article
  20. Article

86 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 2 countries.

John A MorrisNew York Genome Center, New York, NY 10013, USA.ORCID 0000-0003-2769-8202
Christina CaragineNew York Genome Center, New York, NY 10013, USA.ORCID 0000-0002-5958-7200
Zharko DaniloskiNew York Genome Center, New York, NY 10013, USA.ORCID 0000-0002-3453-0849
Júlia DomingoNew York Genome Center, New York, NY 10013, USA.
Timothy BarryDepartment of Statistics and Data Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.
Lu LuNew York Genome Center, New York, NY 10013, USA.ORCID 0000-0002-7343-7161
Kyrie DavisNew York Genome Center, New York, NY 10013, USA.
Marcello ZiosiNew York Genome Center, New York, NY 10013, USA.
Dafni A GlinosNew York Genome Center, New York, NY 10013, USA.ORCID 0000-0001-5556-0222
Stephanie HaoTechnology Innovation Lab, New York Genome Center, New York, NY 10013, USA.
Eleni P MimitouTechnology Innovation Lab, New York Genome Center, New York, NY 10013, USA.ORCID 0000-0001-9737-6394
Peter SmibertTechnology Innovation Lab, New York Genome Center, New York, NY 10013, USA.ORCID 0000-0003-0772-1647
Kathryn RoederDepartment of Statistics and Data Science, Carnegie Mellon University, Pittsburgh, PA 15213, USA.ORCID 0000-0002-8869-6254
Eugene KatsevichDepartment of Statistics and Data Science, The Wharton School, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0003-0598-2050
Tuuli LappalainenNew York Genome Center, New York, NY 10013, USA.ORCID 0000-0002-7746-8109
Neville E SanjanaNew York Genome Center, New York, NY 10013, USA.ORCID 0000-0002-1504-0027
New York Genome Center · USCarnegie Mellon University · USUniversity of Pennsylvania · US

Funding

New York Center for Collaborative Research In Common Disease Genomics: Genome Aggregation and Joint Variant Calling for CCDG Freeze2UM1HG008901 · NHGRI · NEW YORK GENOME CENTER · PI MANIATIS, THOMAS P, WIGLER, MICHAEL H · 2016 to 2020
$56.6M
Statistical models for fine-mapping and interpretation of schizophrenia-associated lociR01MH106842 · NIMH · NEW YORK GENOME CENTER · PI BUSSEMAKER, HARMEN J, LAPPALAINEN, TUULI · 2015 to 2024
$5.0M
Predicting the functional impact of non-coding mutations using patient-specific gene regulatory networksR01CA218668 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI EKTA KHURANA, Neville Sanjana · 2018 to 2026
$4.7M
In situ functional genomics to understand transcriptional regulationDP2HG010099 · NHGRI · NEW YORK GENOME CENTER · PI SANJANA, NEVILLE · 2017 to 2022
$4.4M
Methods for single-cell CRISPR screens and multiomic data: constructing powerful well-calibrated tests, circumventing unmeasured confounding, and accounting for denoising and imputationR01MH123184 · NIMH · CARNEGIE-MELLON UNIVERSITY · PI KATHRYN M ROEDER · 2020 to 2026
$3.8M
Enhancing Susceptibility of HIV Reservoirs to CTL Through a Discovery to Translational ApproachR01AI176601 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI R. Brad Jones, Neville Sanjana · 2023 to 2026
$3.3M
LTBR CARs as next-generation therapies for R/R lymphomaR01CA279135 · NCI · NEW YORK GENOME CENTER · PI Catherine Sibyl Diefenbach, Neville Sanjana · 2023 to 2026
$3.2M
Regulatory modifiers of coding variant penetrance via haplotype epistasis in human populations and diseasesR01GM122924 · NIGMS · NEW YORK GENOME CENTER · PI LAPPALAINEN, TUULI · 2017 to 2021
$1.7M
Linking GWAS variants to function with single-cell pooled CRISPR screensK99HG012792 · NHGRI · NEW YORK GENOME CENTER · PI MORRIS, JOHN ALLAN · 2023 to 2024
$123k
NCI NIH HHS R01 CA218668NCI NIH HHS R01 CA279135NHGRI NIH HHS DP2 HG010099NHGRI NIH HHS K99 HG012792NHGRI NIH HHS UM1 HG008901NIAID NIH HHS R01 AI176601NIGMS NIH HHS R01 GM122924NIMH NIH HHS R01 MH106842NIMH NIH HHS R01 MH123184
6 · The paper itself

Abstract

Most variants associated with complex traits and diseases identified by genome-wide association studies (GWAS) map to noncoding regions of the genome with unknown effects. Using ancestrally diverse, biobank-scale GWAS data, massively parallel CRISPR screens, and single-cell transcriptomic and proteomic sequencing, we discovered 124

Indexed as

DiseaseGenome-Wide Association StudyMultifactorial InheritanceQuantitative Trait LociSingle-Cell AnalysisBlood CellsClustered Regularly Interspaced Short Palindromic RepeatsGenetic Predisposition to DiseaseHumansPolymorphism, Single NucleotideProteomicsRNA-Seq

Identifiers

PMID37141313
PMCPMC10518238
OpenAlexW4368347467

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.