Evidence map›Paper›PMID 37142807›Full record

ArticleNature chemical biology2023

MHC-II dynamics are maintained in HLA-DR allotypes to ensure catalyzed peptide exchange.

Esam T Abualrous, Sebastian Stolzenberg, Jana Sticht, Marek Wieczorek, Yvette Roske, Matthias Günther, Steffen Dähn, Benedikt B Boesen, Marcos Martínez Calvo, Charlotte Biese and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Nature chemical biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
4.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Structural insights into human MHC-II association with invariant chain.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  10. Article
  11. HLA Genes: A Hallmark of Functional Genetic Variation and Complex Evolution.Methods in molecular biology (Clifton, N.J.) · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 3 countries.

Esam T Abualrous *Protein Biochemistry, Institute for Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0001-9582-9089
Sebastian Stolzenberg *Department of Mathematics and Computer Science, Freie Universität Berlin, Berlin, Germany.
Jana Sticht *Protein Biochemistry, Institute for Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0002-4307-4726
Marek WieczorekProtein Biochemistry, Institute for Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.
Yvette RoskeMax-Delbrück-Center for Molecular Medicine, Berlin, Germany.
Matthias GüntherTheoretische Systembiologie (B086), Deutsches Krebsforschungszentrum, Heidelberg, Germany.
Steffen DähnProtein Biochemistry, Institute for Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.
Benedikt B BoesenProtein Biochemistry, Institute for Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.
Marcos Martínez CalvoProtein Biochemistry, Institute for Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.ORCID http://orcid.org/0009-0008-9179-127X
Charlotte BieseProtein Biochemistry, Institute for Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.
Frank KupplerProtein Biochemistry, Institute for Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.
Álvaro Medina-GarcíaProtein Biochemistry, Institute for Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.
Miguel Álvaro-BenitoProtein Biochemistry, Institute for Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany.ORCID http://orcid.org/0000-0002-6019-3567
Thomas HöferTheoretische Systembiologie (B086), Deutsches Krebsforschungszentrum, Heidelberg, Germany.ORCID http://orcid.org/0000-0003-3560-8780
Frank NoéDepartment of Mathematics and Computer Science, Freie Universität Berlin, Berlin, Germany. frank.noe@fu-berlin.de.ORCID http://orcid.org/0000-0003-4169-9324
Christian FreundProtein Biochemistry, Institute for Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany. christian.freund@fu-berlin.de.ORCID http://orcid.org/0000-0001-7416-8226
Freie Universität Berlin · DEGerman Cancer Research Center · DEAin Shams University · EGMax Delbrück Center · DEMicrosoft (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Presentation of antigenic peptides by major histocompatibility complex class II (MHC-II) proteins determines T helper cell reactivity. The MHC-II genetic locus displays a large degree of allelic polymorphism influencing the peptide repertoire presented by the resulting MHC-II protein allotypes. During antigen processing, the human leukocyte antigen (HLA) molecule HLA-DM (DM) encounters these distinct allotypes and catalyzes exchange of the placeholder peptide CLIP by exploiting dynamic features of MHC-II. Here, we investigate 12 highly abundant CLIP-bound HLA-DRB1 allotypes and correlate dynamics to catalysis by DM. Despite large differences in thermodynamic stability, peptide exchange rates fall into a target range that maintains DM responsiveness. A DM-susceptible conformation is conserved in MHC-II molecules, and allosteric coupling between polymorphic sites affects dynamic states that influence DM catalysis. As exemplified for rheumatoid arthritis, we postulate that intrinsic dynamic features of peptide-MHC-II complexes contribute to the association of individual MHC-II allotypes with autoimmune disease.

Indexed as

HLA-D AntigensHLA-DR AntigensAntigen PresentationCatalysisHumansPeptidesProtein BindingHLA-D AntigensHLA-DR AntigensPeptides

Identifiers

PMID37142807
PMCPMC10522485
OpenAlexW4372333975

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.