Evidence map›Paper›PMID 37174608›Full record

ArticleAnimals : an open access journal from MDPI2023

Genome-Wide Association Analysis Identifies Genomic Regions and Candidate Genes for Growth and Fatness Traits in Diannan Small-Ear (DSE) Pigs.

Mei Liu, Qun Lan, Long Yang, Qiuchun Deng, Taiyun Wei, Heng Zhao, Peiya Peng, Xiaoding Lin, Yuhan Chen, Haiming Ma and 2 more

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Animals : an open access journal from MDPI, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.9field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Mei LiuCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.ORCID 0000-0001-6057-3028
Qun LanCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Long YangCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Qiuchun DengCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Taiyun WeiYunnan Province Key Laboratory for Porcine Gene Editing and Xenotransplantation, Yunnan Agricultural University, Kunming 650201, China.
Heng ZhaoYunnan Province Key Laboratory for Porcine Gene Editing and Xenotransplantation, Yunnan Agricultural University, Kunming 650201, China.
Peiya PengCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Xiaoding LinCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Yuhan ChenCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Haiming MaCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.ORCID 0000-0002-2702-2440
Hongjiang WeiYunnan Province Key Laboratory for Porcine Gene Editing and Xenotransplantation, Yunnan Agricultural University, Kunming 650201, China.ORCID 0000-0002-5663-1093
Yulong YinCollege of Animal Science and Technology, Hunan Agricultural University, Changsha 410128, China.
Hunan Agricultural University · CNYunnan Agricultural University · CNChinese Academy of Sciences · CNKey Laboratory of Guangdong Province · CN

Funding

Breeding and Promotion of Lancang black pig 2021kjc-js072Key Science and Technology Project of Yunnan Province 202202AE090032National Natural Science Foundation of China No.32002166Natural Science Foundation of Hunan Province No.2022JJ40171the Laboratory of Lingnan Modern Agriculture Project NT2021005
6 · The paper itself

Abstract

In the livestock industry, the growth and fatness traits are directly related to production efficiency and economic profits. As for Diannan small-ear (DSE) pigs, a unique indigenous breed, the genetic architecture of growth and fatness traits is still elusive. The aim of this study was to search the genetic loci and candidate genes associated with phenotypic traits in DSE pigs using GWAS based on the Geneseek Porcine 50K SNP Chip data. A total of 22,146 single nucleotide polymorphisms (SNPs) were detected in 265 DSE pigs and used for Genome-wide association studies (GWAS) analysis. Seven SNPs were found to be associated with back height, chest circumference, cannon bone circumference, and backfat thickness at the suggestive significance level. Based on gene annotation results, these seven SNPs were, respectively, mapped to the following candidate genes,

Indexed as

candidate geneDiannan small-ear pigfatness traitgrowth traitGWAS

Identifiers

PMID37174608
PMCPMC10177038
OpenAlexW4376630277

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.