Evidence map›Paper›PMID 37175940›Full record

ArticleInternational journal of molecular sciences2023

Comparative Transcriptome and Widely Targeted Metabolome Analysis Reveals the Molecular Mechanism of Powdery Mildew Resistance in Tomato.

Wenjuan Liu, Xiaomin Wang, Lina Song, Wenkong Yao, Meng Guo, Guoxin Cheng, Jia Guo, Shengyi Bai, Yanming Gao, Jianshe Li and 1 more

Abstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Wenjuan LiuCollege of Enology and Horticulture, Ningxia University, Yinchuan 750021, China.
Xiaomin WangCollege of Enology and Horticulture, Ningxia University, Yinchuan 750021, China.ORCID 0000-0001-7355-570X
Lina SongCollege of Enology and Horticulture, Ningxia University, Yinchuan 750021, China.
Wenkong YaoCollege of Enology and Horticulture, Ningxia University, Yinchuan 750021, China.
Meng GuoCollege of Enology and Horticulture, Ningxia University, Yinchuan 750021, China.
Guoxin ChengCollege of Enology and Horticulture, Ningxia University, Yinchuan 750021, China.
Jia GuoState Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F University, Yangling 712100, China.
Shengyi BaiCollege of Enology and Horticulture, Ningxia University, Yinchuan 750021, China.
Yanming GaoCollege of Enology and Horticulture, Ningxia University, Yinchuan 750021, China.
Jianshe LiCollege of Enology and Horticulture, Ningxia University, Yinchuan 750021, China.
Zhensheng KangState Key Laboratory of Crop Stress Biology for Arid Areas, College of Plant Protection, Northwest A&F University, Yangling 712100, China.ORCID 0000-0001-5575-0122

Funding

National Natural Science Foundation of China (NSFC) project ;Ningxia Hui Autonomous Region Agricultural Special and Dominant industry Breeding Project;Ningxia Hui Autonomous Region Key Research and Development Plan (Major) Key Project No.31860561;NXNYYZ20200101;2021BBF02024
6 · The paper itself

Abstract

Powdery mildew is a serious problem in tomato production; therefore, the PM-resistant tomato inbred line, '63187', and the susceptible tomato variety, 'Moneymaker (MM)', were used as experimental materials for the combined analysis of transcriptome and widely targeted metabolome on tomato leaves at 0 h post inoculation (hpi), 12 hpi, and 48 hpi. The results indicated that 276 genes were expressed in all treatments, and the K-means cluster analysis showed that these genes were divided into eight classes in '63187' and ten classes in 'MM'. KEGG enrichment showed that amino acid metabolism, signal transduction, energy metabolism, and other secondary metabolites biosynthesis pathways were significantly enriched. Interestingly, the analysis of WRKY family transcription factors (TFs) showed that the expression of four TFs in '63187' increased with no obvious change in 'MM'; and the expression of one TF in 'MM' increased with no obvious change in '63187'. The combined analysis revealed that both phenylpropanoid biosynthesis and flavonoid biosynthesis pathways were enriched in '63187' and 'MM'. In '63187', six metabolites involved in this pathway were downregulated, and four genes were highly expressed, while in 'MM', three metabolites were upregulated, four metabolites were downregulated, and ten genes were highly expressed. These metabolites and genes might be candidates for PM resistance or susceptibility in subsequent studies. These results provide favorable molecular information for the study of the different resistances of tomatoes to PM, and they provide a basis for the breeding of tomato varieties resistant to PM.

Indexed as

AscomycotaSolanum lycopersicumDisease ResistanceErysipheMetabolomePlant BreedingPlant DiseasesTranscriptomecombined analysispowdery mildewtomatotranscriptomewidely targeted metabolome

Identifiers

PMID37175940
PMCPMC10178879

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.