Evidence map›Paper›PMID 37183792›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2023

Transcriptomic analysis reveals the role of SIX1 in mouse cranial neural crest patterning and bone development.

Aparna Baxi, Karyn Jourdeuil, Timothy C Cox, David E Clouthier, Andre L P Tavares

Open access · bronzeAbstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Aparna BaxiDepartment of Anatomy and Cell Biology, George Washington University School of Medicine and Health Sciences, Washington, District of Columbia, USA.
Karyn JourdeuilDepartment of Anatomy and Cell Biology, George Washington University School of Medicine and Health Sciences, Washington, District of Columbia, USA.
Timothy C CoxDepartments of Oral and Craniofacial Sciences and Pediatrics, University of Missouri-Kansas City, Kansas City, Missouri, USA.
David E ClouthierDepartment of Craniofacial Biology, University of Colorado Anschutz Medical Campus, Aurora, Colorado, USA.
Andre L P TavaresDepartment of Anatomy and Cell Biology, George Washington University School of Medicine and Health Sciences, Washington, District of Columbia, USA.ORCID 0000-0001-9893-2305
George Washington University · USUniversity of Colorado Anschutz Medical Campus · USUniversity of Missouri–Kansas City · US

Funding

Identification of SIX1-related genes as potential candidates for craniofacial birth defectsR03DE028964 · NIDCR · GEORGE WASHINGTON UNIVERSITY · PI TAVARES, ANDRE L P · 2019 to 2020
$319k
NIDCR NIH HHS R03 DE028964NIDCR NIH HHS R03DE028964
6 · The paper itself

Abstract

backgroundGenetic variants of the transcription factor SIX1 and its co-factor EYA1 underlie 50% of Branchio-oto-renal syndrome (BOR) cases. BOR is characterized by craniofacial defects, including malformed middle ear ossicles leading to conductive hearing loss. In this work, we expand our knowledge of the Six1 gene regulatory network by using a Six1-null mouse line to assess gene expression profiles of E10.5 mandibular arches, which give rise to the neural crest (NC)-derived middle ear ossicles and lower jaw, via bulk RNA sequencing.

resultsOur transcriptomic analysis led to the identification of 808 differentially expressed genes that are related to translation, NC cell differentiation, osteogenesis, and chondrogenesis including components of the WNT signaling pathway. As WNT signaling is a known contributor to bone development, we demonstrated that SIX1 is required for expression of the WNT antagonist Frzb in the mandibular arch, and determined that SIX1 expression results in repression of WNT signaling.

conclusionOur results clarify the mechanisms by which SIX1 regulates the development of NC-derived craniofacial elements that are altered in SIX1-associated disorders. In addition, this work identifies novel genes that could be causative to this birth defect and establishes a link between SIX1 and WNT signaling during patterning of NC cells.

Indexed as

Bone DevelopmentHomeodomain ProteinsNeural CrestAnimalsGene Expression ProfilingGene Expression Regulation, DevelopmentalMiceMice, KnockoutOsteogenesisSkullTranscriptomeWnt Signaling PathwayHomeodomain ProteinsSix1 protein, mouseBranchio-oto-renal syndromecraniofacial defectshearing lossSIX1transcriptional regulation

Identifiers

PMID37183792
PMCPMC10592572
OpenAlexW4376616371

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.