Evidence map›Paper›PMID 37212240›Full record

ArticleeLife2023

pYtags enable spatiotemporal measurements of receptor tyrosine kinase signaling in living cells.

Payam E Farahani, Xiaoyu Yang, Emily V Mesev, Kaylan A Fomby, Ellen H Brumbaugh-Reed, Caleb J Bashor, Celeste M Nelson, Jared E Toettcher

Open access · goldAbstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Signal control during tissue regeneration in adult animals.Nature reviews. Molecular cell biology · 2026
    Review
  6. Article
  7. Article
  8. AlkCell communication and signaling : CCS · 2025
    Article
  9. Review
  10. bioRxiv : the preprint server for biology · 2025
    Article
  11. Review
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Payam E FarahaniDepartment of Chemical & Biological Engineering, Princeton University, Princeton, United States.ORCID 0000-0003-2912-0519
Xiaoyu YangDepartment of Bioengineering, Rice University, Houston, United States.ORCID 0000-0001-5636-117X
Emily V MesevDepartment of Molecular Biology, Princeton University, Princeton, United States.
Kaylan A FombyDepartment of Molecular Biology, Princeton University, Princeton, United States.
Ellen H Brumbaugh-ReedDepartment of Molecular Biology, Princeton University, Princeton, United States.
Caleb J BashorDepartment of Bioengineering, Rice University, Houston, United States.ORCID 0000-0003-1354-2098
Celeste M NelsonDepartment of Chemical & Biological Engineering, Princeton University, Princeton, United States.ORCID 0000-0001-9973-8870
Jared E ToettcherDepartment of Molecular Biology, Princeton University, Princeton, United States.ORCID 0000-0002-1546-4030
Princeton University · USRice University · USNational Institutes of Natural Sciences · JP

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007388 · NIGMS · PRINCETON UNIVERSITY · PI CRISTEA, ILEANA M. · 1985 to 2022
$27.4M
Mechanical Clocks During Fetal DevelopmentDP1HD111539 · NICHD · PRINCETON UNIVERSITY · PI NELSON, CELESTE M · 2022 to 2025
$5.7M
Interplay between mechanical forces and retinoic acid in lung developmentR01HL164861 · NHLBI · PRINCETON UNIVERSITY · PI NELSON, CELESTE M · 2022 to 2025
$2.2M
Mechanical Forces and the Regulation of Airway Progenitor CellsR01HD099030 · NICHD · PRINCETON UNIVERSITY · PI NELSON, CELESTE M · 2019 to 2023
$1.7M
A synthetic signaling pathway engineering platform for creating precision cell-based sense-and-response devicesR01EB032272 · NIBIB · RICE UNIVERSITY · PI BASHOR, CALEB · 2021 to 2024
$1.4M
NHLBI NIH HHS R01 HL164861NIBIB NIH HHS R01 EB032272NICHD NIH HHS DP1 HD111539NICHD NIH HHS R01 HD099030NIGMS NIH HHS T32 GM007388
6 · The paper itself

Abstract

Receptor tyrosine kinases (RTKs) are major signaling hubs in metazoans, playing crucial roles in cell proliferation, migration, and differentiation. However, few tools are available to measure the activity of a specific RTK in individual living cells. Here, we present pYtags, a modular approach for monitoring the activity of a user-defined RTK by live-cell microscopy. pYtags consist of an RTK modified with a tyrosine activation motif that, when phosphorylated, recruits a fluorescently labeled tandem SH2 domain with high specificity. We show that pYtags enable the monitoring of a specific RTK on seconds-to-minutes time scales and across subcellular and multicellular length scales. Using a pYtag biosensor for epidermal growth factor receptor (EGFR), we quantitatively characterize how signaling dynamics vary with the identity and dose of activating ligand. We show that orthogonal pYtags can be used to monitor the dynamics of EGFR and ErbB2 activity in the same cell, revealing distinct phases of activation for each RTK. The specificity and modularity of pYtags open the door to robust biosensors of multiple tyrosine kinases and may enable engineering of synthetic receptors with orthogonal response programs.

Indexed as

Receptor Protein-Tyrosine KinasesSignal TransductionCell ProliferationErbB ReceptorsPhosphorylationErbB ReceptorsReceptor Protein-Tyrosine Kinasesbiosensorcell biologycell signalinghumanmap kinasemousereceptor tyrosine kinasesignaling dynamicstyrosine phosphorylation

Identifiers

PMID37212240
PMCPMC10202457
OpenAlexW4377092108

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.