Evidence map›Paper›PMID 37285751›Full record

ArticleDNA repair2023

The DHX9 helicase interacts with human DNA polymerase δ4 and stimulates its activity in D-loop extension synthesis.

Xiaoxiao Wang, Sufang Zhang, Zhongtao Zhang, Nayef A Mazloum, Ernest Y C Lee, Marietta Y W Lee

Open access · greenAbstract read
In one paragraph

Article in DNA repair, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Xiaoxiao WangDepartment of Biochemistry and Molecular Biology, New York Medical College, 15 Dana Road, Valhalla, NY 10595, USA.
Sufang ZhangDepartment of Biochemistry and Molecular Biology, New York Medical College, 15 Dana Road, Valhalla, NY 10595, USA.
Zhongtao ZhangDepartment of Biochemistry and Molecular Biology, New York Medical College, 15 Dana Road, Valhalla, NY 10595, USA.
Nayef A MazloumDepartment of Biochemistry and Molecular Biology, New York Medical College, 15 Dana Road, Valhalla, NY 10595, USA.
Ernest Y C LeeDepartment of Biochemistry and Molecular Biology, New York Medical College, 15 Dana Road, Valhalla, NY 10595, USA.
Marietta Y W LeeDepartment of Biochemistry and Molecular Biology, New York Medical College, 15 Dana Road, Valhalla, NY 10595, USA. Electronic address: Marietta_Lee@NYMC.edu.
New York Medical College · US

Funding

Modification of DNA Polymerase Delta by a Novel Mechanism During Replication StreR01ES014737 · NIEHS · NEW YORK MEDICAL COLLEGE · PI LEE, MARIETTA Y., ZHANG, ZHONGTAO · 2008 to 2017
$3.5M
Modification of DNA Polymerase d by a Novel Mechanism During Replication StressR56ES014737 · NIEHS · NEW YORK MEDICAL COLLEGE · PI LEE, MARIETTA Y., ZHANG, ZHONGTAO · 2020 to 2020
$263k
NIEHS NIH HHS R01 ES014737NIEHS NIH HHS R56 ES014737
6 · The paper itself

Abstract

The extension of the invading strand within a displacement loop (D-loop) is a key step in homology directed repair (HDR) of doubled stranded DNA breaks. The primary goal of these studies was to test the hypotheses that 1) D-loop extension by human DNA polymerase δ4 (Pol δ4) is facilitated by DHX9, a 3' to 5' motor helicase, which acts to unwind the leading edge of the D-loop, and 2) the recruitment of DHX9 is mediated by direct protein-protein interactions between DHX9 and Pol δ4 and/or PCNA. DNA synthesis by Pol δ4 was analyzed in a reconstitution assay by the extension of a 93mer oligonucleotide inserted into a plasmid to form a D-loop. Product formation by Pol δ4 was monitored by incorporation of [α-

Indexed as

DNA-Directed DNA PolymeraseDNA Polymerase IIIDEAD-box RNA HelicasesDNA HelicasesDNA ReplicationHumansNeoplasm ProteinsProliferating Cell Nuclear AntigenDEAD-box RNA HelicasesDHX9 protein, humanDNA-Directed DNA PolymeraseDNA HelicasesDNA Polymerase IIINeoplasm ProteinsProliferating Cell Nuclear AntigenDHX9 helicaseD-loop synthesisDNA double-strand break repairDNA polymerase δHelicase-polymerase interactionHomologous recombination

Identifiers

PMID37285751
PMCPMC10330758
OpenAlexW4376619192

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.