ArticleBMC plant biology2023
Comparative analysis of the chloroplast genomes of Rosa species and RNA editing analysis.
Article in BMC plant biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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14 citing papers in PubMed, 18 citations in OpenAlex.
- Plastome evolution and phylogenomics of Glycine (Leguminosae: Papilionoideae).BMC plant biology · 2026Article
- The pan-plastome of Strobilanthes cusia provided new information about the genetic diversity and cultivation history of an important medicinal and natural dye plant.BMC genomics · 2026Article
- The First Complete Chloroplast Genome ofEcology and evolution · 2026Article
- Characteristics, comparative genomics, and phylogenetic analysis of the chloroplast genome ofPeerJ · 2026Article
- The Complete Chloroplast Genome and the Phylogenetic Analysis ofInternational journal of molecular sciences · 2025Article
- First Identification of MORF Family in Ferns: Molecular Regulation of Organellar RNA Editing inBiology · 2025Article
- Characterization of the FourGenes · 2025Article
- Plastid genomic features and phylogenetic placement in Rosa (Rosaceae) through comparative analysis.BMC plant biology · 2025Article
- The Taihangia mitogenome provides new insights into its adaptation and organelle genome evolution in Rosaceae.Planta · 2025Article
- Comparative genomics and phylogenetic analysis of six Malvaceae species based on chloroplast genomes.BMC plant biology · 2024Article
- Plastid genome and its phylogenetic implications of Asiatic Spiraea (Rosaceae).BMC plant biology · 2024Article
- Mitochondrial genome variation and intergenomic sequence transfers inFrontiers in plant science · 2024Article
- Chloroplast genomes in sevenFrontiers in genetics · 2024Article
- Extensive characterization of 28 complete chloroplast genomes ofComputational and structural biotechnology journal · 2023Article
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Authors and funding
9 authors at 2 institutions in 1 country.
Funding
Abstract
backgroundThe genus Rosa (Rosaceae) contains approximately 200 species, most of which have high ecological and economic values. Chloroplast genome sequences are important for studying species differentiation, phylogeny, and RNA editing.
resultsIn this study, the chloroplast genomes of three Rosa species, Rosa hybrida, Rosa acicularis, and Rosa rubiginosa, were assembled and compared with other reported Rosa chloroplast genomes. To investigate the RNA editing sites in R. hybrida (commercial rose cultivar), we mapped RNA-sequencing data to the chloroplast genome and analyzed their post-transcriptional features. Rosa chloroplast genomes presented a quadripartite structure and had highly conserved gene order and gene content. We identified four mutation hotspots (ycf3-trnS, trnT-trnL, psbE-petL, and ycf1) as candidate molecular markers for differentiation in the Rosa species. Additionally, 22 chloroplast genomic fragments with a total length of 6,192 bp and > 90% sequence similarity with their counterparts were identified in the mitochondrial genome, representing 3.96% of the chloroplast genome. Phylogenetic analysis including all sections and all subgenera revealed that the earliest divergence in the chloroplast phylogeny roughly distinguished species of sections Pimpinellifoliae and Rosa and subgenera Hulthemia. Moreover, DNA- and RNA-sequencing data revealed 19 RNA editing sites, including three synonymous and 16 nonsynonymous, in the chloroplast genome of R. hybrida that were distributed among 13 genes.
conclusionsThe genome structure and gene content of Rosa chloroplast genomes are similar across various species. Phylogenetic analysis based on the Rosa chloroplast genomes has high resolution. Additionally, a total of 19 RNA editing sites were validated by RNA-Seq mapping in R. hybrida. The results provide valuable information for RNA editing and evolutionary studies of Rosa and a basis for further studies on genomic breeding of Rosa species.
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