Evidence map›Paper›PMID 37323566›Full record

ArticleCell reports methods2023

Subcellular spatially resolved gene neighborhood networks in single cells.

Zhou Fang, Adam J Ford, Thomas Hu, Nicholas Zhang, Athanasios Mantalaris, Ahmet F Coskun

Abstract read
In one paragraph

Article in Cell reports methods, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
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  7. Review
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  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zhou FangWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, USA.
Adam J FordWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, USA.
Thomas HuWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, USA.
Nicholas ZhangWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, USA.
Athanasios MantalarisWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, USA.
Ahmet F CoskunWallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, USA.

Funding

Integrative and Quantitative Biosciences Accelerated Training EnvironmentT32GM142616 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI James C. Gumbart, Peng Qiu · 2021 to 2026
$1.8M
Spatial Epigenomic Profiling of Immune Cell Signatures at Subcellular Resolution in Health and DiseaseK25AI140783 · NIAID · STANFORD UNIVERSITY · PI COSKUN, AHMET F. · 2018 to 2022
$539k
NIAID NIH HHS K25 AI140783NIGMS NIH HHS T32 GM142616
6 · The paper itself

Abstract

Image-based spatial omics methods such as fluorescence

Indexed as

Gene Expression ProfilingSingle-Cell AnalysisFibroblastsGene Regulatory NetworksIn Situ Hybridization, Fluorescencecell-type classificationgene neighborhood networksRNA proximityRNA-RNA interactionsspatial omicssubcellular transcriptomics

Identifiers

PMID37323566
PMCPMC10261906

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.