Evidence map›Paper›PMID 37333404›Full record

ArticlebioRxiv : the preprint server for biology2023

DNA Structure Design Is Improved Using an Artificially Expanded Alphabet of Base Pairs Including Loop and Mismatch Thermodynamic Parameters.

Tuan M Pham, Terrel Miffin, Hongying Sun, Kenneth K Sharp, Xiaoyu Wang, Mingyi Zhu, Shuichi Hoshika, Raymond J Peterson, Steven A Benner, Jason D Kahn and 1 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Tuan M PhamDepartment of Biochemistry & Biophysics and Center for RNA Biology, University of Rochester Medical Center, Rochester, NY.
Terrel MiffinDepartment of Chemistry & Biochemistry, University of Maryland, College Park, MD.
Hongying SunDepartment of Surgery, University of Rochester Medical Center, Rochester, NY.
Kenneth K SharpDepartment of Chemistry & Biochemistry, University of Maryland, College Park, MD.
Xiaoyu WangDepartment of Chemistry & Biochemistry, University of Maryland, College Park, MD.
Mingyi ZhuDepartment of Biochemistry & Biophysics and Center for RNA Biology, University of Rochester Medical Center, Rochester, NY.
Shuichi HoshikaFoundation for Applied Molecular Evolution, Alachua, FL.
Raymond J PetersonDNA Analytics, Greenbelt, MD.
Steven A BennerFoundation for Applied Molecular Evolution, Alachua, FL.
Jason D KahnDepartment of Chemistry & Biochemistry, University of Maryland, College Park, MD.
David H MathewsDepartment of Biochemistry & Biophysics and Center for RNA Biology, University of Rochester Medical Center, Rochester, NY.

Funding

RNA Structure Modeling Using Physics and Sequence ComparisonR35GM145283 · NIGMS · UNIVERSITY OF ROCHESTER · PI DAVID H. MATHEWS · 2022 to 2026
$2.7M
Equipment Supplement to 1R01GM141391-01A1 (Easily Used Kits to Evolve Reagents that Covalently Tag and Inactivate Proteins)R01GM141391 · NIGMS · FOUNDATION FOR APPLIED MOLECULAR EVOLUTN · PI BENNER, STEVEN A · 2021 to 2024
$1.4M
NIGMS NIH HHS R01 GM141391NIGMS NIH HHS R35 GM145283
6 · The paper itself

Abstract

We show that

Identifiers

PMID37333404
PMCPMC10274641

What Socratic holds

Textmetadata
LicenceCC BY-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.