ArticleNature biotechnology2023
Democratizing knowledge representation with BioCypher.
Abstract readLetter
In one paragraph
Article in Nature biotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.
0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed, 1 pooled it
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
34 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Graph databases in systems biology: a systematic review.Briefings in bioinformatics · 2024Pooled it
- AI semantics for biomedical data integration.bioRxiv : the preprint server for biology · 2026Article
- From knowledge graph to topological data analysis: a novel framework to analyze gene regulatory networks for tomato-multi-pathogen interactions.The New phytologist · 2026Article
- Enhancing link prediction in biomedical knowledge graphs with BioPathNet.Nature biomedical engineering · 2026Article
- Eras of bioinformatics technologies from command-line interfaces to artificial intelligence (AI) chatbots.Briefings in bioinformatics · 2026Review
- Agentic AI and the rise of in silico team science in biomedical research.Nature biotechnology · 2026Review
- Knowledge Graph-Driven AI in Biohealth: From Biomedical Discovery to Health Risk Prediction.Delaware journal of public health · 2026Article
- pyBiodatafuse: extending interoperability of data using modular queries across biomedical resources.Bioinformatics (Oxford, England) · 2026Article
- OmniPath: integrated knowledgebase for multi-omics analysis.Nucleic acids research · 2026Article
- A Perspective on Software Intelligence for Autonomous Transformations in Biomedical Data and Knowledge.Learning health systems · 2026Article
- Identifying Biomedical Entities for Datasets in Scientific Articles: 4-Step Cache-Augmented Generation Approach Using GPT-4o and PubTator 3.0.JMIR formative research · 2025Article
- BioContextAI is a community hub for agentic biomedical systems.Nature biotechnology · 2025Article
- Benchmarking large language models for personalized, biomarker-based health intervention recommendations.NPJ digital medicine · 2025Article
- Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph.Scientific data · 2025Article
- Data- and knowledge-derived functional landscape of human solute carriers.Molecular systems biology · 2025Article
- Computational Drug Repositioning in Cardiorenal Disease: Opportunities, Challenges, and Approaches.Proteomics · 2025Article
- OLS4: a new Ontology Lookup Service for a growing interdisciplinary knowledge ecosystem.Bioinformatics (Oxford, England) · 2025Article
- AI-Driven Applications in Clinical Pharmacology and Translational Science: Insights From the ASCPT 2024 AI Preconference.Clinical and translational science · 2025Review
- Causal machine learning for single-cell genomics.Nature genetics · 2025Review
- Agents for Change: Artificial Intelligent Workflows for Quantitative Clinical Pharmacology and Translational Sciences.Clinical and translational science · 2025Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
32 authors.
Sebastian LobentanzerHeidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, Bioquant, Heidelberg, Germany. sebastian.lobentanzer@uni-heidelberg.de.ORCID http://orcid.org/0000-0003-3399-6695
Patrick AloyInstitute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, Barcelona, Spain.
Jan BaumbachInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.ORCID http://orcid.org/0000-0002-0282-0462
Balazs BoharEarlham Institute, Norwich, UK.
Vincent J CareyChanning Division of Network Medicine, Mass General Brigham, Harvard Medical School, Boston, MA, USA.
Pornpimol CharoentongCentre for Quantitative Analysis of Molecular and Cellular Biosystems (Bioquant), Heidelberg University, Heidelberg, Germany.
Katharina DanhauserDepartment of Pediatrics, Dr. von Hauner Children's Hospital, University Hospital, LMU Munich, Munich, Germany.
Tunca DoğanBiological Data Science Lab, Department of Computer Engineering, Hacettepe University, Ankara, Turkey.ORCID http://orcid.org/0000-0002-1298-9763
Johann DreoComputational Systems Biomedicine Lab, Department of Computational Biology, Institut Pasteur, Université Paris Cité, Paris, France.
Ian DunhamEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, UK.
Elias FarrHeidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, Bioquant, Heidelberg, Germany.ORCID http://orcid.org/0000-0002-4441-6513
Adrià Fernandez-TorrasInstitute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, Barcelona, Spain.
Benjamin M GyoriLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0001-9439-5346
Michael HartungInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.ORCID http://orcid.org/0000-0002-3992-0125
Charles Tapley HoytLaboratory of Systems Pharmacology, Harvard Medical School, Boston, MA, USA.
Christoph KleinDepartment of Pediatrics, Dr. von Hauner Children's Hospital, University Hospital, LMU Munich, Munich, Germany.
Tamas KorcsmarosEarlham Institute, Norwich, UK.ORCID http://orcid.org/0000-0003-1717-996X
Andreas MaierInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.ORCID http://orcid.org/0000-0003-4408-0068
Matthias MannProteomics Program, Novo Nordisk Foundation Centre for Protein Research, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0003-1292-4799
David OchoaEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, UK.ORCID http://orcid.org/0000-0003-1857-278X
Elena Pareja-LorenteInstitute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, Barcelona, Spain.
Ferdinand PoppApplied Tumour Immunity Clinical Cooperation Unit, National Centre for Tumour Diseases (NCT), German Cancer Research Centre (DKFZ), Heidelberg, Germany.ORCID http://orcid.org/0000-0003-3833-5052
Martin PreusseGerman Centre for Diabetes Research (DZD), Neuherberg, Germany.ORCID http://orcid.org/0000-0003-4789-0592
Niklas ProbulInstitute for Computational Systems Biology, University of Hamburg, Hamburg, Germany.ORCID http://orcid.org/0000-0002-5793-0626
Benno SchwikowskiComputational Systems Biomedicine Lab, Department of Computational Biology, Institut Pasteur, Université Paris Cité, Paris, France.
Bünyamin SenBiological Data Science Lab, Department of Computer Engineering, Hacettepe University, Ankara, Turkey.ORCID http://orcid.org/0000-0002-0853-4731
Maximilian T StraussProteomics Program, Novo Nordisk Foundation Centre for Protein Research, University of Copenhagen, Copenhagen, Denmark.ORCID http://orcid.org/0000-0003-3320-6833
Denes TureiHeidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, Bioquant, Heidelberg, Germany.
Erva UlusoyBiological Data Science Lab, Department of Computer Engineering, Hacettepe University, Ankara, Turkey.ORCID http://orcid.org/0000-0002-2643-0362
Dagmar WaltemathMedical Informatics Laboratory, University Medicine Greifswald, Greifswald, Germany.
Judith A H WodkeMedical Informatics Laboratory, University Medicine Greifswald, Greifswald, Germany.
Julio Saez-RodriguezHeidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, Bioquant, Heidelberg, Germany. pub.saez@uni-heidelberg.de.ORCID http://orcid.org/0000-0002-8552-8976
Funding
United States Department of Defense | Defense Advanced Research Projects Agency (DARPA) W911NF-20-1-0255
Abstract
PubMed holds no abstract for this paper.
Identifiers
PMID
37337100What Socratic holds
Textmetadata
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.