Evidence map›Paper›PMID 37355690›Full record

ArticleNature communications2023

Schizophrenia-associated NRXN1 deletions induce developmental-timing- and cell-type-specific vulnerabilities in human brain organoids.

Rebecca Sebastian, Kang Jin, Narciso Pavon, Ruby Bansal, Andrew Potter, Yoonjae Song, Juliana Babu, Rafael Gabriel, Yubing Sun, Bruce Aronow and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 4 pooled it
8.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 4 syntheses or guidelines pooled it, 53 citations in OpenAlex.

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  7. Intrafamilial Variability inInternational journal of molecular sciences · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Rebecca Sebastian *Graduate Program in Neuroscience & Behavior, UMass Amherst, Amherst, MA, 01003, USA.
Kang Jin *Division of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.ORCID 0000-0001-5638-040X
Narciso PavonDepartment of Biochemistry and Molecular Biology, UMass Amherst, Amherst, MA, 01003, USA.
Ruby BansalDepartment of Biochemistry and Molecular Biology, UMass Amherst, Amherst, MA, 01003, USA.
Andrew PotterDivision of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.
Yoonjae SongDepartment of Biochemistry and Molecular Biology, UMass Amherst, Amherst, MA, 01003, USA.
Juliana BabuDepartment of Biochemistry and Molecular Biology, UMass Amherst, Amherst, MA, 01003, USA.
Rafael GabrielDepartment of Biochemistry and Molecular Biology, UMass Amherst, Amherst, MA, 01003, USA.
Yubing SunDepartment of Mechanical and Industrial Engineering, UMass Amherst, Amherst, MA, 01003, USA.ORCID 0000-0002-6831-3383
Bruce AronowDivision of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, 45229, USA.ORCID 0000-0001-5109-6514
ChangHui PakDepartment of Biochemistry and Molecular Biology, UMass Amherst, Amherst, MA, 01003, USA. cpak@umass.edu.ORCID 0000-0003-4192-7665
Amherst College · USCincinnati Children's Hospital Medical Center · USUniversity of Massachusetts Amherst · US

Funding

Biotechnology Training Program in Applied Life SciencesT32GM135096 · NIGMS · UNIVERSITY OF MASSACHUSETTS AMHERST · PI Jeanne Ann Hardy, Ashish A. Kulkarni · 2020 to 2026
$3.9M
Molecular dissection of synaptic dysfunction in mental disordersR01MH122519 · NIMH · UNIVERSITY OF MASSACHUSETTS AMHERST · PI PAK, CHANGHUI · 2020 to 2024
$2.3M
Patterning human forebrain organoids by engineering controlled biochemical microenvironmentR21MH130843 · NIMH · UNIVERSITY OF MASSACHUSETTS AMHERST · PI SUN, YUBING · 2022 to 2023
$411k
NIGMS NIH HHS T32 GM135096NIMH NIH HHS R01 MH122519NIMH NIH HHS R21 MH130843
6 · The paper itself

Abstract

De novo mutations and copy number deletions in NRXN1 (2p16.3) pose a significant risk for schizophrenia (SCZ). It is unclear how NRXN1 deletions impact cortical development in a cell type-specific manner and disease background modulates these phenotypes. Here, we leveraged human pluripotent stem cell-derived forebrain organoid models carrying NRXN1 heterozygous deletions in isogenic and SCZ patient genetic backgrounds and conducted single-cell transcriptomic analysis over the course of brain organoid development from 3 weeks to 3.5 months. Intriguingly, while both deletions similarly impacted molecular pathways associated with ubiquitin-proteasome system, alternative splicing, and synaptic signaling in maturing glutamatergic and GABAergic neurons, SCZ-NRXN1 deletions specifically perturbed developmental trajectories of early neural progenitors and accumulated disease-specific transcriptomic signatures. Using calcium imaging, we found that both deletions led to long-lasting changes in spontaneous and synchronous neuronal networks, implicating synaptic dysfunction. Our study reveals developmental-timing- and cell-type-dependent actions of NRXN1 deletions in unique genetic contexts.

Indexed as

SchizophreniaCalcium-Binding ProteinsCell Adhesion Molecules, NeuronalCytoplasmHumansNeural Cell Adhesion MoleculesOrganoidsProsencephalonProteasome Endopeptidase ComplexCalcium-Binding ProteinsCell Adhesion Molecules, NeuronalNeural Cell Adhesion MoleculesNRXN1 protein, humanProteasome Endopeptidase Complex

Identifiers

PMID37355690
PMCPMC10290702
OpenAlexW4381890694

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.